View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_4 (Length: 416)
Name: NF4044_low_4
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 13976654 - 13977060
Alignment:
| Q |
1 |
agcaaaggaattacggaaacacataaacaattcagcactttatcaagaattgggaaaagacagcatgacaaaacaagcaatggaaatttgcaacgaagtt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976654 |
agcagaggaattacggaaacacataaacaattcagcactttatcaagaattgggaaaagacagcatgacaaaacaagcaatggaaatttgcaacgaagtt |
13976753 |
T |
|
| Q |
101 |
ttggattatgccgttgatggaattcataaatctgttggtacattggaccaatttgatttccataagctaagtgaatatgcttttgatatcaaggtttggt |
200 |
Q |
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| T |
13976754 |
ttggattatgccgttgatggaattcataaatctgttggtacattggaccaatttgatttccataagctaagtgaatatgcttttgatatcaaggtttggt |
13976853 |
T |
|
| Q |
201 |
taactggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaaaaacaaatgctggtcaaacaatggctaaggttttgaaaacttctat |
300 |
Q |
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| T |
13976854 |
taactggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaacaacaaaagctggtgaaacaatgactaaggttttgaaaacttctat |
13976953 |
T |
|
| Q |
301 |
ggaattaagtagtaatgccattgacatgatggatgttgtttcgcgcatacttaagggtttccatccatcccaatatagtgttagtaggaggcttttatct |
400 |
Q |
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| T |
13976954 |
ggaattaagtagtaatgccattgacatgatggatgttgtttcgcacttctttaagggtttcgatccatcccaatatggtgttagtaggaggcttttatct |
13977053 |
T |
|
| Q |
401 |
gatgatg |
407 |
Q |
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| T |
13977054 |
gatgatg |
13977060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 407
Target Start/End: Original strand, 13966491 - 13966892
Alignment:
| Q |
6 |
aggaattacggaaacacataaacaattcagcactttatcaagaattgggaaaagacagcatgacaaaacaagcaatggaaatttgcaacgaagttttgga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
13966491 |
aggaattacggaaacacataaacaattcagcactttatcaagaattggcaacagacagcatgacaaaacaagcgatggaaatttgcaatgaagttttgga |
13966590 |
T |
|
| Q |
106 |
ttatgccgttgatggaattcataaatctgttggtacattggaccaatttgatttccataagctaagtgaatatgcttttgatatcaaggtttggttaact |
205 |
Q |
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| T |
13966591 |
ttatgctgttgatggaattcataaatctgttggtacattggaccaatttgatttccataagctaagtgaatatgcttttgatatcaaggtttggttaact |
13966690 |
T |
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| Q |
206 |
ggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaaaaacaaatgctggtcaaacaatggctaaggttttgaaaacttctatggaat |
305 |
Q |
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| T |
13966691 |
ggtacactttctcatcaacaaacatgtttagatggttttgtaaatacaaaaacaaaagctggtgaaacaatgactaaggttttgaaaacttctatggaat |
13966790 |
T |
|
| Q |
306 |
taagtagtaatgccattgacatgatggatgttgtttcgcgcatacttaagggtttccatccatcccaatatagtgttagtaggaggcttttatctgatga |
405 |
Q |
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| T |
13966791 |
taagtagtaatgccattgacatgatggatgttgtttcgcacataattaagggtttcaatccatcccaatatggtgttagtaggaggcttttatctgatga |
13966890 |
T |
|
| Q |
406 |
tg |
407 |
Q |
| |
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|| |
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| T |
13966891 |
tg |
13966892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 13958951 - 13959276
Alignment:
| Q |
16 |
gaaacacataaacaattcagcactttatcaagaattgggaaaagacagcatgacaaaacaagcaatggaaatttgcaacgaagttttggattatgccgtt |
115 |
Q |
| |
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|||||||||||||| |||| | ||| ||||||||| ||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |
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| T |
13958951 |
gaaacacataaacagttcatctcttattcaagaattaggacaagacaagatgacaaaacaagcaatggaagtttgcaatgaagttttggattatgctgtt |
13959050 |
T |
|
| Q |
116 |
gatggaattcataaatctgttggtacattggaccaatttgatttccataagctaagtgaatatgcttttgatatcaaggtttggttaactggtacacttt |
215 |
Q |
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|||||||||||||||||||||||| || |||| |||||||| | ||||| || ||||||| ||| |||| |||| ||||||||||| |||||||||| |
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| T |
13959051 |
gatggaattcataaatctgttggtgcagtggataaatttgatattaataagatacatgaatattcttatgatctcaaagtttggttaaccggtacacttt |
13959150 |
T |
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| Q |
216 |
ctcatcaacaaacatgtttagatggttttgtaaatacaaaaacaaatgctggtcaaacaatggctaaggttttgaaaacttctatggaattaagtagtaa |
315 |
Q |
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| T |
13959151 |
ctcatcaacaaacatgtttggatggttttgcaaatacaacaacaaaagccggtgaaacaatggctagggctttgaacacgtctatccaattaagcagtaa |
13959250 |
T |
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| Q |
316 |
tgccattgacatgatggatgttgttt |
341 |
Q |
| |
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||| ||||||||| | |||| ||||| |
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| T |
13959251 |
tgctattgacatggttgatgctgttt |
13959276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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