View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_5 (Length: 410)
Name: NF4044_low_5
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 14759401 - 14759011
Alignment:
| Q |
18 |
attgatctgtccgagtttcaagaaccaaacacggaggacgacacaggtaatggcaatcaaaatgataataatgaagatgctgatgttaaataattacact |
117 |
Q |
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| T |
14759401 |
attgatcggtccgagtttcaagaaccaaacatggaggacgacacaggtaatggcgatcaaaatgataataatgaagatgctgatgttaaataattacact |
14759302 |
T |
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| Q |
118 |
aattatttattagtgtaattaccttgcagaaagtccagcagatgatggatcttacccccaagggaagaaaattactataagctatgaaaaatttcagaag |
217 |
Q |
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| T |
14759301 |
aattatttattagtgtaattaccttgcagaaagtccagcagatgatggatcttacccccaagggaagaaaattactataagctatgaaaaatttcagaag |
14759202 |
T |
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| Q |
218 |
attactagggcccttgtagtgcgccttagacagcacgaagagaacgtggagcgccttagacagaacgaagagactgaggtgcaagaaggtaataatatat |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14759201 |
attactagggcccttgtagtgcaccttagacagcacgaagagaacgtggagcgccttagacagaacgaagagactgaggtgcaagaaggtaataatatat |
14759102 |
T |
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| Q |
318 |
acgatcatatgttatattatacttcaaagtttaattattgtacattgtaaaaattaattccataccatactattcaggttctgaaacttgc |
408 |
Q |
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| T |
14759101 |
atgatcatatgttatattatacttcatagtttaattattgtacattgtaaaaattaattccataccatactattcaggttctgaaacttgc |
14759011 |
T |
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