View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4044_low_9 (Length: 379)
Name: NF4044_low_9
Description: NF4044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4044_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 41089917 - 41089557
Alignment:
| Q |
1 |
ttttacgttattgattcggtctattctcttcagttacttgttacaagcacaagcccccacttttgaatgatattaattcaatagaaagctgtgattctgc |
100 |
Q |
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| T |
41089917 |
ttttacgttattgattcggtctattctcttctgttacttgttacaagcacaagcccccacttttgaatgatattaattcaatagaaagctgtgatgctgc |
41089818 |
T |
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| Q |
101 |
taaattaagtaaataaattgaaaagttaaatatgagaaatgttggatcatgatatcgaattatttcaaaagtaggaaatttgtcttaatttagtaaagta |
200 |
Q |
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| T |
41089817 |
taaattaagtaaataaattgaaaacttaaatatgagaaatgttggatcatgatatcgtattatttcaaaagtaggaaatttgtcttaatttagtaaagta |
41089718 |
T |
|
| Q |
201 |
gtttatatgacgttatatgatgagatggtaaatcacatcttgatctaacgatccatagtcagaaaccgatggcagataggatccaactacgagaagagaa |
300 |
Q |
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| T |
41089717 |
gtttatatgacattatatgatgagatggtaaatcacatcttgatctaacgatccatagtcagaaaccgatggcagataggatccaactacgagaagagaa |
41089618 |
T |
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| Q |
301 |
tgaacttatgtgataagataaatattattgtcaaaaaacagtttttggatttgagaagtttt |
362 |
Q |
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| T |
41089617 |
tgaacttatgtgataagat-aatattattgtcaaaaaacagtttttggatttgagaagtttt |
41089557 |
T |
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