View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_high_14 (Length: 400)

Name: NF4045_high_14
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_high_14
NF4045_high_14
[»] chr5 (12 HSPs)
chr5 (14-379)||(41524464-41524829)
chr5 (70-378)||(41515590-41515895)
chr5 (213-379)||(41702465-41702631)
chr5 (217-379)||(41470068-41470227)
chr5 (111-340)||(41504252-41504481)
chr5 (80-221)||(41469877-41470018)
chr5 (154-249)||(41499805-41499900)
chr5 (98-205)||(41548184-41548291)
chr5 (299-349)||(41499911-41499961)
chr5 (111-173)||(41519872-41519934)
chr5 (84-135)||(41702754-41702805)
chr5 (111-173)||(41509646-41509708)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 41524464 - 41524829
Alignment:
Q  14 catcaacatattttttcttcaacttctcaacttcctcctctaattcattcttcttctcactattagctaatctattcaccttaacttctttcaaaagagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524464 catcaacatattttttcttcaacttctcaacttcctcctctaattcattcttcttctcactattagctaatctattcaccttaacttctttcaaaagagc 41524563  T
Q  114 ttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagagtttctccaagtgaagc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524564 ttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagagtttctccaagtgaagc 41524663  T
Q  214 tcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcatgaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524664 tcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcatgaa 41524763  T
Q  314 tagacttatcttcaaggttgttgttagggtttgtggaatggaaacatggtggtgacccaggttcag 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524764 tagacttatcttcaaggttgttgttagggtttgtggaatggaaacatggtggtgacccaggttcag 41524829  T

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Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 70 - 378
Target Start/End: Original strand, 41515590 - 41515895
Alignment:
Q  70 tcactattagctaatctattcaccttaacttctttcaaaagagcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaa 169  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41515590 tcactattagctaatccattcaccttaacttctttcaaaagtgcttcataactttcttgaactttcttccctttctcacaaatctcttctcttttcttaa 41515689  T
Q  170 actcagactcagcatataaccttgagagtttctccaagtgaagctcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagt 269  Q
    ||||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  41515690 actcagactcagcgtacaaccttgagagtttctccagttgaagctcttctctgagtctcatatacctattctccaaaacagcttcaacactatcaaaaat 41515789  T
Q  270 ttcccattgacaagtttgacgcagtaccataacaagatcatgaatagacttatcttcaaggttgttgttagggtttgtggaatggaaacatggtggtgac 369  Q
    |||| ||||||| |||  ||| |  ||||||||||| |||||||||  ||| | |||||    || |||||| |||||||||||||||| ||||||||||    
T  41515790 ttccaattgacacgttccacgtaacaccataacaagctcatgaatactctttttttcaa---agtcgttaggatttgtggaatggaaacctggtggtgac 41515886  T
Q  370 ccaggttca 378  Q
    |||||||||    
T  41515887 ccaggttca 41515895  T

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Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 379
Target Start/End: Complemental strand, 41702631 - 41702465
Alignment:
Q  213 ctcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcatga 312  Q
    ||||||||||||||| |||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  41702631 ctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga 41702532  T
Q  313 atagacttatcttcaaggttgttgttagggtttgtggaatggaaacatggtggtgacccaggttcag 379  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||||||    
T  41702531 atagacttatcttcaaggttgttgttagggtttgtaaaatggaaatatggtggtgacacaggttcag 41702465  T

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Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 217 - 379
Target Start/End: Original strand, 41470068 - 41470227
Alignment:
Q  217 tctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcatgaatag 316  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  41470068 tctctgagtctcatatacctattctccaaaacagcttcaacactatcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatgaatag 41470167  T
Q  317 acttatcttcaaggttgttgttagggtttgtggaatggaaacatggtggtgacccaggttcag 379  Q
    |||||||||||||    ||||||||||||||||||| | ||  |||||||||||| |||||||    
T  41470168 acttatcttcaag---attgttagggtttgtggaattggaatctggtggtgacccgggttcag 41470227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 111 - 340
Target Start/End: Original strand, 41504252 - 41504481
Alignment:
Q  111 agcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagagtttctccaagtga 210  Q
    ||||||||||||||| || | | ||||  |||| |||  ||| || ||||||||| ||||||||||||||| || ||||||  ||||| |||||  ||||    
T  41504252 agcttcataactttcatgtattatcttttctttctcaacaatttcctctcttttcctaaactcagactcagaatgtaacctcaagagtctctccgtgtga 41504351  T
Q  211 agctcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcat 310  Q
    | ||| ||||| |||||||||| |||  |||||||||||| |||||  ||||||||||| ||||||||||| |||  ||||| |||||||||||||||||    
T  41504352 aactcctctctaagtctcatatccctcctctccaaaacagcttcaatgctatcaaaagtgtcccattgacatgttccacgcaataccataacaagatcat 41504451  T
Q  311 gaatagacttatcttcaaggttgttgttag 340  Q
    ||||||||||||||||||| ||||||||||    
T  41504452 gaatagacttatcttcaagattgttgttag 41504481  T

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Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 41469877 - 41470018
Alignment:
Q  80 ctaatctattcaccttaacttctttcaaaagagcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactc 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||| |||||||| || |||||||||||||||||||||||    
T  41469877 ctaatctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactc 41469976  T
Q  180 agcatataaccttgagagtttctccaagtgaagctcttctct 221  Q
    |||||||| |||||| ||| |||| ||||||| ||| |||||    
T  41469977 agcatatacccttgaaagtctctctaagtgaaactcctctct 41470018  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 41499805 - 41499900
Alignment:
Q  154 tcttctcttttcttaaactcagactcagcatataaccttgagagtttctccaagtgaagctcttctctgagtctcatatacctattctccaaaaca 249  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||| | |||||||||| ||| ||||||||||| | || |||| |||||||||||    
T  41499805 tcttctcttttcttagactcaaactcagcatgtaaccttgagagtctttccaagtgaaactcctctctgagtcttaaatccctactctccaaaaca 41499900  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 41548184 - 41548291
Alignment:
Q  98 cttctttcaaaagagcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagag 197  Q
    |||| ||||| ||||| | |||||||||||| |||||||||  ||| | |||||| || ||||||||||| |||||   |||||| | ||||||||||||    
T  41548184 cttccttcaagagagcattataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagag 41548283  T
Q  198 tttctcca 205  Q
    ||||||||    
T  41548284 tttctcca 41548291  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 41499911 - 41499961
Alignment:
Q  299 taacaagatcatgaatagacttatcttcaaggttgttgttagggtttgtgg 349  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||| ||||    
T  41499911 taacaagatcatgaataggattatcttcaaggttgttcttagggttggtgg 41499961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 41519872 - 41519934
Alignment:
Q  111 agcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactc 173  Q
    ||||||||||| |||||| |||||||||||||| | |||||  || |||||||||||||||||    
T  41519872 agcttcataacgttcttgtactttcttccctttctgacaaagttcctctcttttcttaaactc 41519934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 41702805 - 41702754
Alignment:
Q  84 tctattcaccttaacttctttcaaaagagcttcataactttcttgaactttc 135  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||| ||||||    
T  41702805 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttc 41702754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 41509646 - 41509708
Alignment:
Q  111 agcttcataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactc 173  Q
    ||||||||||| |||||| |||||||||||||| | | |||| || ||||||||||| |||||    
T  41509646 agcttcataacgttcttgtactttcttccctttctgaaaaatttcctctcttttctttaactc 41509708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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