View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_high_17 (Length: 375)

Name: NF4045_high_17
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_high_17
NF4045_high_17
[»] chr2 (5 HSPs)
chr2 (149-352)||(4473371-4473574)
chr2 (12-82)||(4473234-4473304)
chr2 (174-233)||(31840343-31840403)
chr2 (12-73)||(31840488-31840549)
chr2 (160-225)||(41288142-41288207)
[»] chr4 (5 HSPs)
chr4 (248-366)||(39934150-39934268)
chr4 (161-232)||(33266518-33266589)
chr4 (161-233)||(30333097-30333168)
chr4 (16-63)||(30333041-30333088)
chr4 (303-358)||(31854860-31854915)
[»] chr1 (1 HSPs)
chr1 (160-233)||(7054578-7054651)
[»] chr3 (1 HSPs)
chr3 (166-233)||(30265675-30265742)
[»] chr5 (2 HSPs)
chr5 (159-233)||(13376854-13376928)
chr5 (300-369)||(2225231-2225300)
[»] chr8 (3 HSPs)
chr8 (12-73)||(38587646-38587707)
chr8 (161-233)||(38587776-38587847)
chr8 (190-233)||(35387814-35387857)
[»] chr7 (1 HSPs)
chr7 (168-233)||(32136043-32136108)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 149 - 352
Target Start/End: Original strand, 4473371 - 4473574
Alignment:
Q  149 tctgatgtgtaggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaagggagaagatcatcg 248  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4473371 tctgaagtgtaggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaagggataagatcatcg 4473470  T
Q  249 acatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggactg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4473471 acatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggactg 4473570  T
Q  349 tatc 352  Q
    ||||    
T  4473571 tatc 4473574  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 4473234 - 4473304
Alignment:
Q  12 atgaatgccatgttggagaacggttctccctggagaatattggagaacactgttttctgcattaacttgtc 82  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4473234 atgaatgccatgttggagaacggttctccctgaagaatattggagaacactgttttctgcattaacttgtc 4473304  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 31840403 - 31840343
Alignment:
Q  174 taaattaagaacaaa-tattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  31840403 taaattaagaaaaaaatattgtatttttgtattggagtaaaactacatggttgttcttgaa 31840343  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 31840549 - 31840488
Alignment:
Q  12 atgaatgccatgttggagaacggttctccctggagaatattggagaacactgttttctgcat 73  Q
    ||||||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||||||||    
T  31840549 atgaatgccatgttggagaatagttctccctagagaacattggagaacactattttctgcat 31840488  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 41288207 - 41288142
Alignment:
Q  160 ggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttg 225  Q
    ||||| ||||| ||||||||||||||||  ||| |||||||| |||||||||||||||||||||||    
T  41288207 ggacccacttaaaataaattaagaacaagcattatatttttggattggagtaaaactacatggttg 41288142  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 39934150 - 39934268
Alignment:
Q  248 gacatgagagtgtagtggattaacaaccccacatttttctacaattgacttagtcaaaattattaaataaccgttcaatggtgtagattggcactggact 347  Q
    |||| ||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||| || |||| || ||||||| |||||| |||||||||    
T  39934150 gacaggagagtgcagtggaataataaccccatatttttctacaattgacttagtcaaaattattgaaaaaccattaaatggtggagattgacactggact 39934249  T
Q  348 gtatccagtgaaaaattca 366  Q
    ||||||| |||||||||||    
T  39934250 gtatccaatgaaaaattca 39934268  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 33266518 - 33266589
Alignment:
Q  161 gacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttga 232  Q
    |||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||||||    
T  33266518 gacccacttaaaataaattaagaacaaacattgtaattttgcattggagtaaaactacatatttgttcttga 33266589  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 30333097 - 30333168
Alignment:
Q  161 gacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    |||| |||||||||||| ||| |||||| |||||||||| ||||| ||||||||||| ||| |||||||||||    
T  30333097 gacccacttagaataaactaaaaacaaacattgtatttt-gcattcgagtaaaactatatgattgttcttgaa 30333168  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 30333041 - 30333088
Alignment:
Q  16 atgccatgttggagaacggttctccctggagaatattggagaacactg 63  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||    
T  30333041 atgccatgttggagaacggttctccctgaagaacattgaagaacactg 30333088  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 31854915 - 31854860
Alignment:
Q  303 aaaattattaaataaccgttcaatggtgtagattggcactggactgtatccagtga 358  Q
    ||||||||||||||| |||| ||||||| ||||| |||||||||| | ||||||||    
T  31854915 aaaattattaaataatcgttgaatggtggagattagcactggactatctccagtga 31854860  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 7054578 - 7054651
Alignment:
Q  160 ggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054578 ggacccacttaaaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 7054651  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 30265675 - 30265742
Alignment:
Q  166 acttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30265675 acttagaataaattaagaacaaacattgtatttttgcattggagtaaaactacatggttgttcttgaa 30265742  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 13376928 - 13376854
Alignment:
Q  159 aggacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    |||||| ||||| |||||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  13376928 aggacccacttaaaataaattaaaaacaaacattatatttttgcattagagtaaaactacatggttgttcttgaa 13376854  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 2225231 - 2225300
Alignment:
Q  300 gtcaaaattattaaataaccgttcaatggtgtagattggcactggactgtatccagtgaaaaattcacta 369  Q
    |||||||||||||||||||| || ||||||| |||||||||||  ||| |||||| |||||  |||||||    
T  2225231 gtcaaaattattaaataaccattaaatggtgaagattggcactcaactatatccaatgaaattttcacta 2225300  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 38587646 - 38587707
Alignment:
Q  12 atgaatgccatgttggagaacggttctccctggagaatattggagaacactgttttctgcat 73  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  38587646 atgaatgccatgttggagaacggttctccctggagaacattggataacaccgttttctgcat 38587707  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 38587776 - 38587847
Alignment:
Q  161 gacctacttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  38587776 gacccacttataataaattaagaacaaacattgtatttttgcattggagtataacta-atggttgttcttgaa 38587847  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 35387857 - 35387814
Alignment:
Q  190 attgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  35387857 attgtatttttgtattggagtaaaactacatggttgttcttgaa 35387814  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 32136043 - 32136108
Alignment:
Q  168 ttagaataaattaagaacaaatattgtatttttgcattggagtaaaactacatggttgttcttgaa 233  Q
    |||||||||||||||||||||  ||||| ||||||||| |||||||| ||||||||||||||||||    
T  32136043 ttagaataaattaagaacaaaccttgtagttttgcattagagtaaaattacatggttgttcttgaa 32136108  T

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