View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4045_high_21 (Length: 337)
Name: NF4045_high_21
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 3820383 - 3820066
Alignment:
| Q |
6 |
gtcgaagaatatgttgcaaagaaatgtctgaatggtagggcttgtgtccttgctctccccatgtgaaaaagtaccaaagaattgtctcatctgaccctac |
105 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3820383 |
gtcgaaaaagatgttgcaaagaaatgtctgaatggtagggcttgtgtccttgctctccccatgtgaaaaagtaccaaagaattgtctcatctgaccctac |
3820284 |
T |
|
| Q |
106 |
attatgctaaaaatttgcgaacttcatgtaactctgccgacaaaaattgattatttagcatcttaatgaatatctaagattaatatattcagt-nnnnnn |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3820283 |
attatgctaaaaatttgcgaacttcatgtaactctgccgacaaaaattgattatttagcatcttaatgaatatctaagattaatatattcagtaaaaaaa |
3820184 |
T |
|
| Q |
205 |
ngattgatttttgtaccatcgaacttggtattaaagcatttgtaagtacgcatgagttttctagaatatacaaagttttagacaaattgaggctgctatg |
304 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3820183 |
agattgatttttgtaccattgcacttggtaataaagcatttgtaagtacgcatgagttttctagaatatacaaagttttagacaaattgaggctgctatg |
3820084 |
T |
|
| Q |
305 |
agtcttagctaaagaaag |
322 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3820083 |
agtcttagctaaagaaag |
3820066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University