View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4045_high_30 (Length: 250)
Name: NF4045_high_30
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32184915 - 32184660
Alignment:
| Q |
1 |
ttgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactcttcttttc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32184915 |
ttgtttcttaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactcttctttcc |
32184816 |
T |
|
| Q |
101 |
ctcaagtca----------------tcttcaaccttcttctcctgattctgttgttgatccttttttccatagagttcaaacccttcgcgacttcaccaa |
184 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32184815 |
ctcaagtcaacttcatcccatttcatcttcaaccttcttctcctgattctgttgttgatccttttttccatagagttcaaacccttcgcgactccaccaa |
32184716 |
T |
|
| Q |
185 |
ccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32184715 |
ccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatctctg |
32184660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 32177754 - 32177648
Alignment:
| Q |
1 |
ttgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactcttcttttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||| ||| | |
|
|
| T |
32177754 |
ttgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcacaactccttgatcactttcactcttgtttcc |
32177655 |
T |
|
| Q |
101 |
ctcaagt |
107 |
Q |
| |
|
||||||| |
|
|
| T |
32177654 |
ctcaagt |
32177648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 32177595 - 32177493
Alignment:
| Q |
138 |
gttgatccttttttccatagagttcaaacccttcgcgacttcaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatct |
237 |
Q |
| |
|
||||| |||||||||| | |||| |||||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32177595 |
gttgacccttttttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccatcactgtttttatct |
32177496 |
T |
|
| Q |
238 |
ctg |
240 |
Q |
| |
|
||| |
|
|
| T |
32177495 |
ctg |
32177493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University