View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_high_31 (Length: 250)

Name: NF4045_high_31
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_high_31
NF4045_high_31
[»] chr8 (4 HSPs)
chr8 (14-187)||(33111433-33111606)
chr8 (30-88)||(24953956-24954013)
chr8 (25-74)||(40844032-40844081)
chr8 (131-190)||(33110637-33110696)
[»] chr7 (5 HSPs)
chr7 (16-88)||(26403996-26404067)
chr7 (19-88)||(43655207-43655275)
chr7 (25-88)||(46890460-46890522)
chr7 (25-88)||(46890818-46890880)
chr7 (39-88)||(27251662-27251710)
[»] chr5 (6 HSPs)
chr5 (16-88)||(2496935-2497006)
chr5 (16-71)||(5896232-5896287)
chr5 (26-88)||(33406021-33406082)
chr5 (16-76)||(28472778-28472843)
chr5 (132-170)||(35763095-35763133)
chr5 (130-158)||(2493453-2493481)
[»] chr2 (8 HSPs)
chr2 (13-88)||(31667924-31667998)
chr2 (25-88)||(4199324-4199386)
chr2 (16-71)||(16261869-16261924)
chr2 (28-88)||(7088057-7088116)
chr2 (25-88)||(8288976-8289038)
chr2 (132-188)||(16262677-16262732)
chr2 (131-175)||(16261632-16261676)
chr2 (132-168)||(42534686-42534722)
[»] chr3 (5 HSPs)
chr3 (16-88)||(49003632-49003703)
chr3 (16-88)||(49082042-49082113)
chr3 (25-88)||(49081658-49081720)
chr3 (28-88)||(51799347-51799406)
chr3 (16-71)||(21179376-21179430)
[»] chr1 (5 HSPs)
chr1 (16-71)||(27053253-27053308)
chr1 (20-88)||(49911963-49912030)
chr1 (132-190)||(27052925-27052982)
chr1 (132-191)||(46502647-46502705)
chr1 (132-189)||(46501807-46501864)
[»] chr4 (8 HSPs)
chr4 (20-74)||(43632874-43632928)
chr4 (25-88)||(35306920-35306982)
chr4 (16-88)||(21063912-21063986)
chr4 (132-177)||(20214043-20214088)
chr4 (25-88)||(36518566-36518628)
chr4 (25-67)||(44804432-44804474)
chr4 (132-186)||(20215316-20215369)
chr4 (130-168)||(41294151-41294189)
[»] chr6 (4 HSPs)
chr6 (28-88)||(7684768-7684827)
chr6 (25-88)||(31157465-31157527)
chr6 (19-76)||(32631183-32631245)
chr6 (44-88)||(31154140-31154183)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 33111433 - 33111606
Alignment:
Q  14 cagagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcattcccgtttcaaatggcgggaatgatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  33111433 cagagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcataattcccgtttcaaatagcgggaatgatg 33111532  T
Q  114 aaaatgacnnnnnnnnccaacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagattt 187  Q
    |||| |||        |||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||    
T  33111533 aaaacgacaaaaaaaaccaacaaaaatagaaagtgggtcattttaaaaaataaatctaataggaaatcagattt 33111606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 24953956 - 24954013
Alignment:
Q  30 tgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  24953956 tgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 24954013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 40844081 - 40844032
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa 74  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40844081 gtttttgtttttatttcttatgaataaaataattagtgcttttaaattaa 40844032  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 33110696 - 33110637
Alignment:
Q  131 caacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagatttgaa 190  Q
    ||||||||||||||||||| ||||||||  |||||||||| |||||  || |||||||||    
T  33110696 caacaaaaatagaaagtgggtcattttgcgaaataaatctgatagggggttagatttgaa 33110637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 26404067 - 26403996
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  26404067 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 26403996  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 43655207 - 43655275
Alignment:
Q  19 aaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  43655207 aaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 43655275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 46890522 - 46890460
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  46890522 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 46890460  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 46890818 - 46890880
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  46890818 gtttttgtttttatttgttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 46890880  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 27251710 - 27251662
Alignment:
Q  39 ttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  27251710 ttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 27251662  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 2496935 - 2497006
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  2496935 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 2497006  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 5896287 - 5896232
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5896287 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaat 5896232  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 33406021 - 33406082
Alignment:
Q  26 tttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  33406021 tttttgtttttatttcttatgattaaaataattagtgtttttaaattaa-atatatcatcatt 33406082  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 28472778 - 28472843
Alignment:
Q  16 gagaaagtagtttttgtttttatttct-----tatgaataaaataattagtgtttttaaattaata 76  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  28472778 gagaaagtagtttttgtttttatttctaacactatgaataaaataattagtgtttttaaattaata 28472843  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 35763095 - 35763133
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatct 170  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  35763095 aacaaaaataaaaagtgggtcattttggaaaataaatct 35763133  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 2493481 - 2493453
Alignment:
Q  130 ccaacaaaaatagaaagtggatcattttg 158  Q
    |||||||||||||||||||||||||||||    
T  2493481 ccaacaaaaatagaaagtggatcattttg 2493453  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 31667998 - 31667924
Alignment:
Q  13 gcagagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  31667998 gcagagaaagtagtttttgtttttatttcttatgaataaaataattagtgttttaaaattaa-atatatcatcatt 31667924  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 4199386 - 4199324
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  4199386 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 4199324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 16261924 - 16261869
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaat 71  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16261924 gagaaagtagtttttgtttttatttcttatgaataaattaattagtgtttttaaat 16261869  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 7088057 - 7088116
Alignment:
Q  28 tttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  7088057 tttgtttttatttcttatgaataaaataattggtgtttttaaattaa-atatatcatcatt 7088116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 8289038 - 8288976
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  8289038 gtttttgtttttatttcttatgaataagataattagtgttttaaaattaa-atatatcatcatt 8288976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 16262677 - 16262732
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagatttg 188  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  16262677 aacaaaaatagaaagtggatcattttagaaaataaatctgatagg-agtcagatttg 16262732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 16261676 - 16261632
Alignment:
Q  131 caacaaaaatagaaagtggatcattttggaaaataaatctaatag 175  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  16261676 caacaaaaattgaaagtggatcattttggaaaataaatctgatag 16261632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 42534686 - 42534722
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaat 168  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  42534686 aacaaaaatagaaagtgggtcattttgggaaataaat 42534722  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 49003703 - 49003632
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  49003703 gagaaagtagtttttatttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 49003632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 49082042 - 49082113
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  49082042 gagaaagtagtttttgtttttgtttcttataaataaaataattagtgtttttaaattaa-atatatcatcatt 49082113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 49081720 - 49081658
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  49081720 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 49081658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 51799347 - 51799406
Alignment:
Q  28 tttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51799347 tttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 51799406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 21179430 - 21179376
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaat 71  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21179430 gagaaagtagttttt-tttttatttcttatgaataaaataattagtgtttttaaat 21179376  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 27053308 - 27053253
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27053308 gagaaagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaat 27053253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 49912030 - 49911963
Alignment:
Q  20 aagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||    
T  49912030 aagtagtttttgtttttatttcttatgaataaaatagttagtgtttttaaattaa-atatatcatcatt 49911963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 27052982 - 27052925
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagatttgaa 190  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||  ||||||||||||    
T  27052982 aacaaaaatagaaagtgggtcattttgggaaataaatctgatagg-ggtcagatttgaa 27052925  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 46502647 - 46502705
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagatttgaaa 191  Q
    |||||||| ||||||||||||||||||| |||||||||| ||| |  |||||||||||||    
T  46502647 aacaaaaacagaaagtggatcattttgg-aaataaatctgataaggggtcagatttgaaa 46502705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 46501864 - 46501807
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagatttga 189  Q
    |||||||||||||||||  |||||||| ||||||||||| ||| |  |||||||||||    
T  46501864 aacaaaaatagaaagtgagtcattttgaaaaataaatctgataaggggtcagatttga 46501807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 43632874 - 43632928
Alignment:
Q  20 aagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43632874 aagtagtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa 43632928  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 35306920 - 35306982
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  35306920 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 35306982  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 21063912 - 21063986
Alignment:
Q  16 gagaaagtagtttttgtttttatttcttatgaataaaataattagtg--tttttaaattaatatttatcatcatt 88  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||  |||||||||||||||| || ||||||    
T  21063912 gagaaagtaatttttgtttttatttcgtttgaataaaataattagtgtttttttaaattaatattgattatcatt 21063986  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 20214088 - 20214043
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatctaatagga 177  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  20214088 aacaaaaatagaaagtgggtcattttggaaaataaatctgatagga 20214043  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 36518566 - 36518628
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||| ||| |||||||||||||||| |||||||||||||| ||||||| || ||||||||||    
T  36518566 gtttttatttctatttcttatgaataagataattagtgttttaaaattaa-atatatcatcatt 36518628  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 44804432 - 44804474
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgttttt 67  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  44804432 gtttttgtttttatttcttataaataaaataattggtgttttt 44804474  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 20215316 - 20215369
Alignment:
Q  132 aacaaaaatagaaagtggatcattttggaaaataaatctaataggaagtcagatt 186  Q
    |||||||||||||||||| ||||||||  |||||||||| ||||| |||||||||    
T  20215316 aacaaaaatagaaagtgggtcattttgagaaataaatctgatagg-agtcagatt 20215369  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 41294189 - 41294151
Alignment:
Q  130 ccaacaaaaatagaaagtggatcattttggaaaataaat 168  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  41294189 ccaacaaaaatagaaagtgggtcattttgggaaataaat 41294151  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 7684827 - 7684768
Alignment:
Q  28 tttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  7684827 tttgtttttatttcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 7684768  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 31157465 - 31157527
Alignment:
Q  25 gtttttgtttttatttcttatgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  31157465 gtttttgtttttatctcttatgaataaaataattagtgtttttaaattaa-atatatcatcatt 31157527  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 32631245 - 32631183
Alignment:
Q  19 aaagtagtttttgtttttatttct-----tatgaataaaataattagtgtttttaaattaata 76  Q
    ||||||||| ||||||||||||||     ||||||||| ||||||||||||||||||||||||    
T  32631245 aaagtagttattgtttttatttctaattatatgaataatataattagtgtttttaaattaata 32631183  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 31154183 - 31154140
Alignment:
Q  44 atgaataaaataattagtgtttttaaattaatatttatcatcatt 88  Q
    |||||||||||||||| |||||||||||||| || ||||||||||    
T  31154183 atgaataaaataattattgtttttaaattaa-atatatcatcatt 31154140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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