View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_high_39 (Length: 233)
Name: NF4045_high_39
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_high_39 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 4473823 - 4473613
Alignment:
| Q |
28 |
aaataattaaacccggtatatcaatatacctattcgaggaatgtggttatcaatttaaaagccataaccnnnnnnnattgcaaaactaat-----aaaaa |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
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| T |
4473823 |
aaataattaaacccggtatatcaatatacatattcgaggaatgtggttatcaatttaaaagccataacctttttttattgcaaaaataattaaaaaaaaa |
4473724 |
T |
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| Q |
123 |
aggttatgcgcctattgtaacatgttttcgtattttaattagtcttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggt |
222 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
4473723 |
aggttatgcggctattgtaacatgttttcgtattttaattagtcatagagcatctacaatgctaaaataagatttatgttctttaagcattttgatgggt |
4473624 |
T |
|
| Q |
223 |
ccatcattgcc |
233 |
Q |
| |
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||||||||||| |
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| T |
4473623 |
ccatcattgcc |
4473613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 41287932 - 41287998
Alignment:
| Q |
167 |
ttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgcc |
233 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41287932 |
ttagagcatctacactgctaaaacaagatttatgttcttcaagcattttggtgggtccatcattgcc |
41287998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 31840271 - 31840331
Alignment:
| Q |
171 |
agcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattg |
231 |
Q |
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| T |
31840271 |
agcatctacaatgctagaacaagatttatgtccttcaaacattttagtggatccatcattg |
31840331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 38587921 - 38587857
Alignment:
| Q |
169 |
agagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgcc |
233 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38587921 |
agagcatctacaatgctagaagaagatttatgttcttcaagcattttggtgggtccatcattgcc |
38587857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 35387744 - 35387802
Alignment:
| Q |
173 |
catctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattg |
231 |
Q |
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|||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| |
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| T |
35387744 |
catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccatcattg |
35387802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 7054728 - 7054661
Alignment:
| Q |
165 |
tcttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgcc |
233 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||| || | |||||||||||||||| |
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| T |
7054728 |
tcttagagcatctacaatgctagaacaagatttgtgttcttcaagca-ttgggtgggtccatcattgcc |
7054661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 39999121 - 39999058
Alignment:
| Q |
167 |
ttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcatt |
230 |
Q |
| |
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|||||||||||||||||||| |||||||||| | |||||||||||||||| ||||| ||||||| |
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| T |
39999121 |
ttagagcatctacaatgctagaacaagatttgtattcttcaagcattttggtgggttcatcatt |
39999058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 32136163 - 32136120
Alignment:
| Q |
188 |
aacaagatttatgttcttcaagcattttgatgggtccatcattg |
231 |
Q |
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||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
32136163 |
aacaaaatttatgttcttcaagcattttggtgggtccaccattg |
32136120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 21256836 - 21256885
Alignment:
| Q |
167 |
ttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttg |
216 |
Q |
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||||||||||| ||||||||||| | |||||||||||| |||||||||| |
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| T |
21256836 |
ttagagcatctccaatgctaaaatcatatttatgttcttgaagcattttg |
21256885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 33266663 - 33266602
Alignment:
| Q |
170 |
gagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattg |
231 |
Q |
| |
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|||||||||||| |||| ||||| ||||||||| ||||||||||||| |||||||||||||| |
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| T |
33266663 |
gagcatctacaaagctagaacaaaatttatgtttttcaagcattttggtgggtccatcattg |
33266602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 30333242 - 30333178
Alignment:
| Q |
169 |
agagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatgggtccatcattgcc |
233 |
Q |
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|||||||||| ||||||| || || ||||||||||||||||||||| |||||||||||||||| |
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| T |
30333242 |
agagcatctaaaatgctagaaaaaagcttatgttcttcaagcattttggtgggtccatcattgcc |
30333178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 10866961 - 10866906
Alignment:
| Q |
166 |
cttagagcatctacaatgctaaaacaagatttatgttcttcaagcattttgatggg |
221 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||| |
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| T |
10866961 |
cttagagcatctacaatgctagaacaatatttatgttcttgaagcattttggtggg |
10866906 |
T |
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