View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_high_40 (Length: 222)

Name: NF4045_high_40
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_high_40
NF4045_high_40
[»] chr8 (9 HSPs)
chr8 (12-222)||(5843005-5843215)
chr8 (12-222)||(5849747-5849957)
chr8 (12-210)||(5887144-5887342)
chr8 (40-210)||(5949036-5949206)
chr8 (40-210)||(5984564-5984734)
chr8 (39-210)||(5960300-5960471)
chr8 (48-210)||(5921152-5921314)
chr8 (133-180)||(41351226-41351273)
chr8 (102-183)||(39916637-39916718)
[»] chr2 (2 HSPs)
chr2 (116-189)||(42788990-42789063)
chr2 (153-189)||(27172818-27172854)
[»] chr7 (1 HSPs)
chr7 (128-193)||(45676080-45676145)
[»] chr3 (2 HSPs)
chr3 (128-188)||(34626700-34626760)
chr3 (133-183)||(44674039-44674089)
[»] chr5 (2 HSPs)
chr5 (133-183)||(1281333-1281383)
chr5 (133-183)||(1319335-1319385)
[»] chr1 (3 HSPs)
chr1 (133-183)||(16127411-16127461)
chr1 (133-183)||(16138921-16138971)
chr1 (128-180)||(51044474-51044526)
[»] chr4 (1 HSPs)
chr4 (131-183)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5843005 - 5843215
Alignment:
Q  12 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843005 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 5843104  T
Q  112 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatataa 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5843105 agagaaacttccacgttttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacctagacacatcatgatataa 5843204  T
Q  212 ataaatgaacc 222  Q
    |||||||||||    
T  5843205 ataaatgaacc 5843215  T

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Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5849747 - 5849957
Alignment:
Q  12 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849747 atgaaaataacattggaggaaaagaagaagagcaattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 5849846  T
Q  112 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatataa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  5849847 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacctagacatatcatgatataa 5849946  T
Q  212 ataaatgaacc 222  Q
    |||||||||||    
T  5849947 ataaatgaacc 5849957  T

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Target: chr8; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 5887144 - 5887342
Alignment:
Q  12 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 111  Q
    |||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||     
T  5887144 atgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatg 5887243  T
Q  112 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  5887244 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccgcatctctgcagacctacacacatcatgatata 5887342  T

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Target: chr8; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 5949036 - 5949206
Alignment:
Q  40 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 139  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5949036 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5949135  T
Q  140 cttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  5949136 cttagataatttatccatcttaatcttcaactctttccacatctctgcagacctacacatatcatgatata 5949206  T

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Target: chr8; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 5984564 - 5984734
Alignment:
Q  40 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 139  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5984564 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5984663  T
Q  140 cttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  5984664 cttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacatatcatgatata 5984734  T

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Target: chr8; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 5960300 - 5960471
Alignment:
Q  39 aagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcagg 138  Q
    |||||||| ||||||| |||||||||||||||| |||| |||| ||||||| ||||| |||||||||||  | |||||||||||||||||||||||||||    
T  5960300 aagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatcagg 5960399  T
Q  139 tcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  5960400 tcttagataatttatccatcttaatctacaactctttccacatctctccagacctacacacatcatgatata 5960471  T

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Target: chr8; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 5921152 - 5921314
Alignment:
Q  48 tgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagata 147  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  148 atttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatata 5921314  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 41351226 - 41351273
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccaca 180  Q
    ||||||||| | |||||||||||||||||||| ||||||||| |||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccaca 41351273  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 39916718 - 39916637
Alignment:
Q  102 cttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    ||||||| | || |||| ||||||| || | ||||||||| |||||||| |||||||| ||||| || || |||||||||||    
T  39916718 cttcttcgtgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 42788990 - 42789063
Alignment:
Q  116 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcag 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |||||||||||||||||    
T  42788990 aaacttccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcag 42789063  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 27172818 - 27172854
Alignment:
Q  153 tccatcttaatctacaactctttccacatctctgcag 189  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27172818 tccatcttaatctgcaactctttccacatctttgcag 27172854  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 45676080 - 45676145
Alignment:
Q  128 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacct 193  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 45676145  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 34626700 - 34626760
Alignment:
Q  128 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgca 188  Q
    |||||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctttgca 34626760  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||| |||| ||||||| |||||||||| ||||||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 1319335 - 1319385
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||| |||||||||||  ||||||| | |||||||||||||||||||||    
T  1319335 atcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    ||||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 16138921 - 16138971
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    ||||||| ||| ||| || |||||||| |||||||||||||||||||||||    
T  16138921 atcaggttttaaatagttaatccatctcaatctacaactctttccacatct 16138971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 51044526 - 51044474
Alignment:
Q  128 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccaca 180  Q
    ||||||||||| || | ||| ||||||||||| |||||||| |||||||||||    
T  51044526 ttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 51044474  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  131 aaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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