View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4045_high_5 (Length: 579)
Name: NF4045_high_5
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 47258879 - 47258545
Alignment:
| Q |
18 |
aattaactctttaaattcaactagaacacaatttccacaaacaaagtatcataatttacctcttccttgttgtatttatcacgtgtagtaaagcataaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47258879 |
aattaactctttaaattcaactagaacacaatttccacaaacaaagtatcataatttacctcttccttgttgaatttatcacgtgtagtaaagcataaat |
47258780 |
T |
|
| Q |
118 |
cttgcacttggggtggggtaatatcttcatacttcctttataatttaaaagaaaaatcaatcacattaatgttcaagaaaataaagaaaaggtatatgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47258779 |
cttgcacttggggtggggtaatatcttcatacttcctttataatttaaaagaaaaatcaatcacattaatgttcaagaaaataaagaaaaggtatatgga |
47258680 |
T |
|
| Q |
218 |
atattcaaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaat |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47258679 |
atatttaaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaat |
47258580 |
T |
|
| Q |
318 |
atatctatgtatgatacagcaagatgaagtgtatc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47258579 |
atatctatgtatgatacagcaagatgaagtgtatc |
47258545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 446 - 563
Target Start/End: Complemental strand, 47265704 - 47265587
Alignment:
| Q |
446 |
tatatatacaattttgaaatagtgtgtaaagacccataagattacctcgatggatcgaagatagttataagcactggaaacaacaggagcatcaaacttt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47265704 |
tatatatacaattttgaaatagtgtgtaaagacccataagattacctcgatggatcgaagatagttataagcactggaaacaacaggagcatcaaacttt |
47265605 |
T |
|
| Q |
546 |
tcatgggtagttgattct |
563 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47265604 |
tcatgggtagttgattct |
47265587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 351 - 437
Target Start/End: Complemental strand, 47265838 - 47265752
Alignment:
| Q |
351 |
tctctgaagcatctccatgtaatccttcattggtcttctctttgtctccatctaagcacaaaaacatcgaatctcaatcaaatattt |
437 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
47265838 |
tctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaagtacaaaaacatcgaatctcgatcaaatattt |
47265752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 106 - 352
Target Start/End: Complemental strand, 47266165 - 47265914
Alignment:
| Q |
106 |
taaagcataaatcttgcacttggggtggggtaatatcttcatacttccttt-ataatttaaaaga-aaaatcaatcacat--taatgttcaagaaaataa |
201 |
Q |
| |
|
|||||||||| |||| || ||||||||| ||||||||||||||||||||| || || |||| | ||||||||||| || |||||||||||||||||| |
|
|
| T |
47266165 |
taaagcataattcttcaacatggggtgggttaatatcttcatacttccttttatgatcaaaaaaataaaatcaatca-atcataatgttcaagaaaataa |
47266067 |
T |
|
| Q |
202 |
a--gaaaaggtatatggaatattcaaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgata |
299 |
Q |
| |
|
| ||||| || || |||||||| ||| |||||||||||||||||||||| | |||||||||||||| ||||| ||| |||| ||| | |||| |
|
|
| T |
47266066 |
aaagaaaaatcattcacaaaattcaaagcgggtatagaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagata |
47265967 |
T |
|
| Q |
300 |
gggtgagaagataggaatatatctatgtatgatacagcaagatgaagtgtatc |
352 |
Q |
| |
|
|||| | |||||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
47265966 |
gggtaataagataggaacctatctatgtatgaaacagcgcgatgaagtgtatc |
47265914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 47258473 - 47258414
Alignment:
| Q |
347 |
tgtatctctgaagcatctccatgtaatccttcattggtcttctctttgtctccatctaag |
406 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
47258473 |
tgtatctctgaagtatctccatgtaatccttcattggtcttctcttttcctccaactaag |
47258414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University