View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_high_7 (Length: 501)

Name: NF4045_high_7
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_high_7
NF4045_high_7
[»] chr8 (13 HSPs)
chr8 (18-490)||(5849935-5850405)
chr8 (30-491)||(5843192-5843651)
chr8 (187-452)||(5887417-5887678)
chr8 (18-124)||(5887685-5887792)
chr8 (172-371)||(5960544-5960734)
chr8 (230-371)||(5921386-5921524)
chr8 (230-371)||(5984806-5984944)
chr8 (230-371)||(5949278-5949416)
chr8 (54-150)||(5960804-5960900)
chr8 (18-135)||(5921591-5921705)
chr8 (79-150)||(5984990-5985061)
chr8 (261-311)||(41351576-41351626)
chr8 (86-135)||(5949480-5949529)
[»] chr2 (1 HSPs)
chr2 (239-333)||(42789098-42789192)
[»] chr5 (1 HSPs)
chr5 (261-318)||(2590612-2590669)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 5850405 - 5849935
Alignment:
Q  18 tcagtgtactcacagtttcatctgcgtataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattcta 117  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5850405 tcagtgtaatcacagtttcatctgcttataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaacctgttctattcta 5850306  T
Q  118 aagctaaagccaaagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850305 aagctaaagccaaagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaa 5850206  T
Q  218 aacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaataca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850205 aacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaataca 5850106  T
Q  318 tgacaacttatggacaagattgctgctggagttctgtcccaaaacatgctggtactnnnnnnnnttcttaaccactttacnnnnnnnnnnnaagtgcact 417  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||           |||||||||    
T  5850105 tcacaacttatggacaagattgctgctggagttctgtcccaaaacttgctggtact-aaaaaaattcttaaccactttac-ttttttttttaagtgcact 5850008  T
Q  418 ttactatttcattaagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgat 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850007 ttactatttcattaagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgat 5849935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 491
Target Start/End: Complemental strand, 5843651 - 5843192
Alignment:
Q  30 cagtttcatctgcgtataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattctaaagctaaagcca 129  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5843651 cagtttcatctgcttataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaacctgttctattctaaagctaaagcca 5843552  T
Q  130 aagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843551 aagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatca 5843452  T
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5843451 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatg 5843352  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggtactnnnnnnnnttcttaaccactttacnnnnnnnnnnnaagtgcactttactatttcat 429  Q
    ||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||           |||||||||||||||||||||    
T  5843351 gacaagattgctgctggagttctgtcccaaaacttgctggtact-aaaaaaattcttaaccactttac-ttttttttttaagtgcactttactatttcat 5843254  T
Q  430 taagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgatg 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843253 taagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgatg 5843192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 187 - 452
Target Start/End: Complemental strand, 5887678 - 5887417
Alignment:
Q  187 agacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtca 286  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5887678 agacttattcatcaaactaaggagaaaagaaa-caagacatcaatcatgggacatcactcttgctgtaacaaggagaaggtcaacagaggactatggtca 5887580  T
Q  287 cctgaagaagatgaaaaactcatcaaatacatgacaacttatggacaagattgctgctggagttctgtcccaaaacatgctggtactnnnnnnnnttctt 386  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||        |||||    
T  5887579 cctgaagaagatgaaaagctcatcaaatacatcacaacttatggacaagattgctgctggagctctgtaccaaaacttgctggtactgaaaaaaattctt 5887480  T
Q  387 aaccactttacnnnnnnnnnnnaagtgcactttactatttcattaagtatatagttccctaaaaaa 452  Q
    ||||||| |||           |||||  |||||||||||||||||||||||||||||||||||||    
T  5887479 aaccactatac---ttttttttaagtgtgctttactatttcattaagtatatagttccctaaaaaa 5887417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 5887792 - 5887685
Alignment:
Q  18 tcagtgtactcacagtttcatctgcgtataaatcaccctttttt-ctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattct 116  Q
    |||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||| ||||    
T  5887792 tcagtgtactcaaagtttcatctgcttataaatcatcctttttttctgttactcttctcactccattcatttcataatttaatgcaacctattctgttct 5887693  T
Q  117 aaagctaa 124  Q
     |||||||    
T  5887692 taagctaa 5887685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 371
Target Start/End: Complemental strand, 5960734 - 5960544
Alignment:
Q  172 atatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaac 271  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||| | ||||||||    ||  |||||| ||||| || | |||  ||||||| ||     
T  5960734 atatttgtaatttc-agactttttgatcaaactaaggagaaaagaaa-ctagacatca----tgagacatcattcttgttgcaacaaacagaaggttaaa 5960641  T
Q  272 agaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatggacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||   || | || ||||||||||| ||||||| ||||||||    
T  5960640 agaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac---atggttgttggagttctgttccaaaacttgctggta 5960544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 5921524 - 5921386
Alignment:
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5921524 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatg 5921425  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||   || | || ||||||||||| ||||||| ||||||||    
T  5921424 gac---atggttgttggagttctgttccaaaacttgctggta 5921386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 5984944 - 5984806
Alignment:
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5984944 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatg 5984845  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||   || | || ||||||||||| ||||||| ||||||||    
T  5984844 gac---atggttgttggagttctgttccaaaacttgctggta 5984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 5949416 - 5949278
Alignment:
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |  ||||| ||||    
T  5949416 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatagtacaacatatg 5949317  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||   || | || ||||||||||| ||||||| ||||||||    
T  5949316 gac---atggttgttggagttctgttccaaaacttgctggta 5949278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 5960900 - 5960804
Alignment:
Q  54 ccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattctaaagctaaagccaaagatataatatagagtttca 150  Q
    |||||| |||||||||||  |||  |||||| ||||| ||||||||||||  ||||||||||| || ||||||||||||||| || |||||| ||||    
T  5960900 ccttttctctgttactctgatcacaccattcttttcacaatttaatgcaacatgttctattcttaaactaaagccaaagatagaagatagagcttca 5960804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 5921705 - 5921591
Alignment:
Q  18 tcagtgtactcacagtttcatctgcgtataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattcta 117  Q
    |||||| ||||||||||||   ||| |||| |||| |||||| |||||| ||||  |||  |||||| ||||||||||||||||||  | |||||||||     
T  5921705 tcagtgcactcacagtttc---tgcatatatatcatccttttctctgttgctctgatcacaccattcttttcataatttaatgcaatatattctattctt 5921609  T
Q  118 aagctaaagccaaagata 135  Q
    || |||||||||||||||    
T  5921608 aaactaaagccaaagata 5921591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 5985061 - 5984990
Alignment:
Q  79 ccattcatttcataatttaatgcaagctgttctattctaaagctaaagccaaagatataatatagagtttca 150  Q
    |||||| ||||||||||||||||||  | ||||||||| |||||||||||||||||| || |||||| ||||    
T  5985061 ccattcttttcataatttaatgcaacatattctattcttaagctaaagccaaagatagaagatagagattca 5984990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 41351626 - 41351576
Alignment:
Q  261 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatca 311  Q
    ||||||| || ||||| || ||||| |||||||||||||||||||||||||    
T  41351626 agaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca 41351576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 5949529 - 5949480
Alignment:
Q  86 tttcataatttaatgcaagctgttctattctaaagctaaagccaaagata 135  Q
    |||| |||||||||||||  | ||||||||| ||||||||||||||||||    
T  5949529 tttcttaatttaatgcaacatattctattcttaagctaaagccaaagata 5949480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 42789192 - 42789098
Alignment:
Q  239 catcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatggaca 333  Q
    |||||||||||||| |  ||  ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||||||    
T  42789192 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggaca 42789098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 2590612 - 2590669
Alignment:
Q  261 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat 318  Q
    ||||||| || ||||| || |||||||||||||||||||| |||||||| | ||||||    
T  2590612 agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat 2590669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University