View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_1 (Length: 773)
Name: NF4045_low_1
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 728; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 10 - 773
Target Start/End: Original strand, 45208873 - 45209639
Alignment:
| Q |
10 |
catcatcaaagcaaggagagaaacctcttgtgtggaacagccattaggtaaccgtgggtaagcgttgggtggtggcatactacattcatcaccgttgaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45208873 |
catcatcaaagcaaggagagaaacctcttgtgtggaacagccattaggtaaccgtgggtaagcgtcgggtggtggcatactacattcatcaccgttgaaa |
45208972 |
T |
|
| Q |
110 |
taaatcttctccggaaaaccccagccgctacggaaactaaaacttgatttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45208973 |
taaatcttctccggaaaaccccagccgctacggaaactaaaacttgatttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagctt |
45209072 |
T |
|
| Q |
210 |
gcatgagtacatcattgaaaaatttaactccccaaagcattgcagtatcatctgttaagaccagtttttcattagtacatcattgattt--atattgata |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45209073 |
gcatgagtacatcattgaaaaatttaactccccaaagcattacagtatcatctgttaagaccagtttttcattagtacatcattgatttttatattgata |
45209172 |
T |
|
| Q |
308 |
agatagcaaaacctt-gaatataatgaacaaacacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatt |
406 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209173 |
agatagcaaaacctttgaatataatgaacaaacacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatt |
45209272 |
T |
|
| Q |
407 |
tatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagta |
506 |
Q |
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| T |
45209273 |
tatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagta |
45209372 |
T |
|
| Q |
507 |
gttatgcttaatgtgccagtgaactttaatcggacacatatgcctagtacattcaactaaaggctcaacacctttctctccagggctgttaacaatcgag |
606 |
Q |
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| T |
45209373 |
gttatacttaatgtgccagtgaactttaatcggacacatatgcctagtacattcaactaaaggctcaacacctttctctccagggctgttaacaatcgag |
45209472 |
T |
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| Q |
607 |
gccaaattcgatgaattacttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttcagtctttttacaatttcaaggactaaa |
706 |
Q |
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| T |
45209473 |
gccaaattcgatgaattacttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttcagtccctttacaatttcaaggactaaa |
45209572 |
T |
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| Q |
707 |
gtgagaaatcgcggtgtcaaagactaacacatttatttactctattaattacaatttagaaggaaat |
773 |
Q |
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| T |
45209573 |
gtgagaaatcgcggtgtcaaagactaacacatttatttactctattaattacaatttagaaggaaat |
45209639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 338 - 570
Target Start/End: Complemental strand, 5551199 - 5550967
Alignment:
| Q |
338 |
acacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgtt |
437 |
Q |
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|||||||||||||| | || || || |||| || || ||| ||||| ||||||||| ||| |||| || ||||| ||||||||||||||||||| ||| |
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| T |
5551199 |
acacaaacttacttatcgacccgtaaggagttattggttttgagttgaaactgaaaagttgagtcagattgtcaaagtttggatgttgaacaaccaagtt |
5551100 |
T |
|
| Q |
438 |
ccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatc |
537 |
Q |
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| T |
5551099 |
ccaatctgagtaattcatcctgtaattgaagttagtaacagtaacctttacgcgccaatactccttgtagttaagcttaatgtgccagtgaactcggata |
5551000 |
T |
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| Q |
538 |
ggacacatatgcctagtacattcaactaaaggc |
570 |
Q |
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| T |
5550999 |
ggacacatatgactagtacattgaaccaaaggc |
5550967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 5551792 - 5551688
Alignment:
| Q |
163 |
ctttcgaaaaagtagctccgactgtacgttaccattaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtatcatct |
262 |
Q |
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|||||| ||||||||||| || ||||| |||||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
5551792 |
ctttcggaaaagtagctctgattgtacattaccaataggaccagcttgcatgagtaaatcattgtagaatttaactccccaaagcattgctgtatcatct |
5551693 |
T |
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| Q |
263 |
gttaa |
267 |
Q |
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||||| |
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| T |
5551692 |
gttaa |
5551688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 372 - 570
Target Start/End: Original strand, 5539650 - 5539848
Alignment:
| Q |
372 |
tgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaatta |
471 |
Q |
| |
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||||||||||||| ||||| ||| ||| |||| || | ||| |||||||| |||||||||| |||||| |||||||||||| | |||||||| |||||| |
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| T |
5539650 |
tgatttgtagttgaaactggaaagttgagtcagattgtaaaagtttggatgctgaacaaccaagttccaatctgagtaattcatcctgtaatttaaatta |
5539749 |
T |
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| Q |
472 |
aaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatcggacacatatgcctagtacattcaactaaaggc |
570 |
Q |
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| T |
5539750 |
gtaatagtgacctttacgcgccaatactccttgtcattaagattaatgtgccagtgaacttggataggacacatatgactagtacattgaaccaaaggc |
5539848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 5539052 - 5539161
Alignment:
| Q |
158 |
ttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtat |
257 |
Q |
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|||| |||||| |||| |||||| | ||||| |||||| ||||||| ||||||||||||| ||||||| ||| |||||||||||||| ||||| | || |
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| T |
5539052 |
ttatcctttcggaaaattagctctaattgtacattaccagtaggaccggcttgcatgagtaaatcattgtaaagtttaactccccaaatcattgttgcat |
5539151 |
T |
|
| Q |
258 |
catctgttaa |
267 |
Q |
| |
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|||||||||| |
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| T |
5539152 |
catctgttaa |
5539161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 679
Target Start/End: Original strand, 5539899 - 5539954
Alignment:
| Q |
624 |
acttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttc |
679 |
Q |
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| T |
5539899 |
acttggactgtaaccacacagaaaaaggaaatgtgtgagtgtataatgttaatttc |
5539954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 569
Target Start/End: Complemental strand, 5008349 - 5008124
Alignment:
| Q |
344 |
acttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtc |
443 |
Q |
| |
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|||||||| || | ||||| ||| |||||| ||||||||| ||||||| | || ||||| || || || |||||||| |||||||||| |||||| || |
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| T |
5008349 |
acttacttattaaaccataaggatttaatgacttgtagttgaaactgaacagctgagtcaaattgtcgaagtttggatgctgaacaaccaagttccaatc |
5008250 |
T |
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| Q |
444 |
tgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatcggacac |
543 |
Q |
| |
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|| |||||| | | |||||| |||||| || || || |||||| ||||| || || | ||||||| ||||| |||||||| | | || |||||| |
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| T |
5008249 |
ggaataattcatacggtaattaaaattagtaatggaaaccttcacacgccagtattccttgtagttaaccttaacatgccagtggattcggattggacac |
5008150 |
T |
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| Q |
544 |
atatgcctagtacattcaactaaagg |
569 |
Q |
| |
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||||| |||||||||| ||| ||||| |
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| T |
5008149 |
atatgactagtacattgaaccaaagg |
5008124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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