View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_10 (Length: 527)
Name: NF4045_low_10
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_10 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 80 - 508
Target Start/End: Original strand, 8437652 - 8438078
Alignment:
| Q |
80 |
ttttatttatcatttttatccagctctatatcctatcatgaccatcaactgcgttataaannnnnnnatggagcatttggtcgccataataagataatta |
179 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||| ||| || ||||||||||||||||||||||||| |
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| T |
8437652 |
ttttatttatcatttttatcttgctctatatcctatcatgatcatcaaccacgttctaaatttttttatgaagtatttggtcgccataataagataattg |
8437751 |
T |
|
| Q |
180 |
tatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataagaatttgaaactaattaagaaaatataac |
279 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8437752 |
tatcatatcatgtctcaattcaatgtttaatgagacaataccgatattggatttctttcattttataataagaatttgaaactaattaagaaaatgtaac |
8437851 |
T |
|
| Q |
280 |
cactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatc |
379 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437852 |
caccgtaagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatc |
8437951 |
T |
|
| Q |
380 |
atgttggatgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaatt |
479 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
8437952 |
atgttggatgtgtaaaaatgggagggttacgataatttgtaaaatgcgagtaaatcggttttagaatttcaagataaaatgagatcatgtcttctgaat- |
8438050 |
T |
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| Q |
480 |
ctctctattgttcgttgttcagtaaattg |
508 |
Q |
| |
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||||||| | |||||||| ||||||||| |
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| T |
8438051 |
-tctctatagctcgttgtttagtaaattg |
8438078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 8437229 - 8437304
Alignment:
| Q |
13 |
aaaatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437229 |
aaaatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
8437304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 8414027 - 8414267
Alignment:
| Q |
13 |
aaaatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcc |
112 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||| |||||||||||| || | ||||||||||||||| |||||| |||||||| | || |||||| |
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| T |
8414027 |
aaaatataatagaacaaaataatgttatttgattgattatcatgtgagcattca-catatgatatgatttgatttatg-tttttatcttgttcaatatcc |
8414124 |
T |
|
| Q |
113 |
tatcatgaccatcaactgcgttataaannnnnnnatggagcatttggtcgccataataagataattatatcatatcatgtctcaattcaatgtttaatga |
212 |
Q |
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| T |
8414125 |
tttcatgactatcaaccaggttttaaaaaaaattatggtccattcgatcgtcataataagataattatatcatattatgtctcaatttaatatttgatga |
8414224 |
T |
|
| Q |
213 |
gacaatactgatattggatttctttcattttataataagaatt |
255 |
Q |
| |
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|| ||||| ||||| ||||||||||||||||||||| |||| |
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| T |
8414225 |
gataataccaatattaaatttctttcattttataataataatt |
8414267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 8408850 - 8408940
Alignment:
| Q |
165 |
ataataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataagaatt |
255 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||| |||| |
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| T |
8408850 |
ataataacataattgtatcatatcatgtctcaattcaatgtttgatgagacaatacagatattgagtttcttttattttataataataatt |
8408940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 8428482 - 8428247
Alignment:
| Q |
17 |
tataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatc |
116 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||| ||||||| |||||||||| |||| ||||| ||| |
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| T |
8428482 |
tataatagaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatcttatt |
8428384 |
T |
|
| Q |
117 |
atgaccatcaactgcgttataaannnnnnnatggagcatttggtcgccataataagataattatatcatatcatgtctcaattcaatgtttaatgagaca |
216 |
Q |
| |
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|||||||| || || |||| || ||| |||| |||| |||| ||| | |||||||| |||| |||||||||||||| |||||||| |
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| T |
8428383 |
atgaccatgaaacatattctaaatttttta--ggtcaattaggtcaccatgataatctaaatgtatcatattatgtttcaattcaatgtttgatgagaca |
8428286 |
T |
|
| Q |
217 |
atactgatattggatttctttcattttataataagaatt |
255 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| |||| |
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| T |
8428285 |
atattgatattgagtttctttcattttataataataatt |
8428247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 8450955 - 8451061
Alignment:
| Q |
17 |
tataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatc |
116 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||| ||||||| |||||||||| |||| ||||| ||| |
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| T |
8450955 |
tataatagaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatcttatt |
8451053 |
T |
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| Q |
117 |
atgaccat |
124 |
Q |
| |
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|||||||| |
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| T |
8451054 |
atgaccat |
8451061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 7916130 - 7916039
Alignment:
| Q |
159 |
gtcgccataataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataa |
250 |
Q |
| |
|
|||| ||| |||||||| || |||||||| ||||||||||||||||||| |||||| ||| ||||||||| ||||||| |||||||||||| |
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| T |
7916130 |
gtcgtcatgataagatatttgtatcatattatgtctcaattcaatgtttgatgagataatgctgatattgagtttcttttattttataataa |
7916039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 8408698 - 8408774
Alignment:
| Q |
15 |
aatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcat |
92 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| | ||||| |||||||| ||||||||||| |||||||||| |
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|
| T |
8408698 |
aatataatagaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttatcat |
8408774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 8481175 - 8481079
Alignment:
| Q |
23 |
agaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatcatg |
119 |
Q |
| |
|
||||||| || |||||||||||||||| || |||||| |||||||| ||||||| ||| ||||||||||||| |||| |||| ||||| ||||||| |
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|
| T |
8481175 |
agaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgatataattgtatttatcattttaatccggctcaatatcttatcatg |
8481079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 8451103 - 8451197
Alignment:
| Q |
165 |
ataataagataattatatcatatcatgtctcaattcaatgtttaatgagaca----atactgatattggatttctttcattttataataagaatt |
255 |
Q |
| |
|
||||||| ||| |||||||||| |||| | |||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
8451103 |
ataataatctaaatatatcatattatgtttgaattcaatgtttgatgagacaatatatactgatattgagtttctttcattttataataataatt |
8451197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 8447955 - 8448007
Alignment:
| Q |
25 |
aacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatat |
77 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
8447955 |
aacaaaacaatgttgtttggttggttatcatgtgagcattaaacacatgatat |
8448007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 8349982 - 8350032
Alignment:
| Q |
69 |
atatgatatgattttatttatcatttttatccagctctatatcctatcatg |
119 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |||| ||||| ||||||| |
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| T |
8349982 |
atatgatatgattgtatttatcattttaatccggctcaatatcttatcatg |
8350032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 8377035 - 8377095
Alignment:
| Q |
173 |
ataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggattt |
233 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||||| |||| ||||| ||||||| |||| |
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|
| T |
8377035 |
ataattgtatcatattatgtctcgactcaatgtttaacgagaaaataccgatattgaattt |
8377095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 167 - 508
Target Start/End: Complemental strand, 73228 - 72889
Alignment:
| Q |
167 |
aataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataagaatttgaaactaatt |
266 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
73228 |
aataagataattgtatcatatcatgtctcaattcaatatttaatgagaaaatactgatattgaatttctttcattttataataagaatttgaaagtaatt |
73129 |
T |
|
| Q |
267 |
aagaaaatataaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcc |
366 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73128 |
aagaaaatgtaaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcc |
73029 |
T |
|
| Q |
367 |
ctttgacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaatcggttttagaattttaagataaaatgagatca |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
73028 |
ctttgacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatgcgagtaaattggttttagaatttcaagataaaatgagatca |
72929 |
T |
|
| Q |
467 |
tgtattttgaattctctctattgttcgttgttcagtaaattg |
508 |
Q |
| |
|
||| ||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
72928 |
tgtcttttgaatt--ctctattgctcgttgttcaataaattg |
72889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 35978442 - 35978397
Alignment:
| Q |
172 |
gataattatatcatatcatgtctcaattcaatgtttaatgagacaa |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35978442 |
gataattgtatcatatcatgtctcaattcattgttcgatgagacaa |
35978397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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