View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_11 (Length: 501)

Name: NF4045_low_11
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_11
NF4045_low_11
[»] chr8 (13 HSPs)
chr8 (18-490)||(5849935-5850405)
chr8 (30-491)||(5843192-5843651)
chr8 (187-452)||(5887417-5887678)
chr8 (18-124)||(5887685-5887792)
chr8 (172-371)||(5960544-5960734)
chr8 (230-371)||(5921386-5921524)
chr8 (230-371)||(5984806-5984944)
chr8 (230-371)||(5949278-5949416)
chr8 (54-150)||(5960804-5960900)
chr8 (18-135)||(5921591-5921705)
chr8 (79-150)||(5984990-5985061)
chr8 (261-311)||(41351576-41351626)
chr8 (86-135)||(5949480-5949529)
[»] chr2 (1 HSPs)
chr2 (239-333)||(42789098-42789192)
[»] chr5 (1 HSPs)
chr5 (261-318)||(2590612-2590669)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 5850405 - 5849935
Alignment:
Q  18 tcagtgtactcacagtttcatctgcgtataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattcta 117  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5850405 tcagtgtaatcacagtttcatctgcttataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaacctgttctattcta 5850306  T
Q  118 aagctaaagccaaagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850305 aagctaaagccaaagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaa 5850206  T
Q  218 aacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaataca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850205 aacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaataca 5850106  T
Q  318 tgacaacttatggacaagattgctgctggagttctgtcccaaaacatgctggtactnnnnnnnnttcttaaccactttacnnnnnnnnnnnaagtgcact 417  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||           |||||||||    
T  5850105 tcacaacttatggacaagattgctgctggagttctgtcccaaaacttgctggtact-aaaaaaattcttaaccactttac-ttttttttttaagtgcact 5850008  T
Q  418 ttactatttcattaagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgat 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850007 ttactatttcattaagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgat 5849935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 491
Target Start/End: Complemental strand, 5843651 - 5843192
Alignment:
Q  30 cagtttcatctgcgtataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattctaaagctaaagcca 129  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5843651 cagtttcatctgcttataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaacctgttctattctaaagctaaagcca 5843552  T
Q  130 aagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843551 aagatataatatagagtttcaccttttttgtccattagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatca 5843452  T
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5843451 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatg 5843352  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggtactnnnnnnnnttcttaaccactttacnnnnnnnnnnnaagtgcactttactatttcat 429  Q
    ||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||           |||||||||||||||||||||    
T  5843351 gacaagattgctgctggagttctgtcccaaaacttgctggtact-aaaaaaattcttaaccactttac-ttttttttttaagtgcactttactatttcat 5843254  T
Q  430 taagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgatg 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843253 taagtatatagttccctaaaaaatatatcttattatatggttcatttatttatatcatgatg 5843192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 187 - 452
Target Start/End: Complemental strand, 5887678 - 5887417
Alignment:
Q  187 agacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtca 286  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5887678 agacttattcatcaaactaaggagaaaagaaa-caagacatcaatcatgggacatcactcttgctgtaacaaggagaaggtcaacagaggactatggtca 5887580  T
Q  287 cctgaagaagatgaaaaactcatcaaatacatgacaacttatggacaagattgctgctggagttctgtcccaaaacatgctggtactnnnnnnnnttctt 386  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||        |||||    
T  5887579 cctgaagaagatgaaaagctcatcaaatacatcacaacttatggacaagattgctgctggagctctgtaccaaaacttgctggtactgaaaaaaattctt 5887480  T
Q  387 aaccactttacnnnnnnnnnnnaagtgcactttactatttcattaagtatatagttccctaaaaaa 452  Q
    ||||||| |||           |||||  |||||||||||||||||||||||||||||||||||||    
T  5887479 aaccactatac---ttttttttaagtgtgctttactatttcattaagtatatagttccctaaaaaa 5887417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 5887792 - 5887685
Alignment:
Q  18 tcagtgtactcacagtttcatctgcgtataaatcaccctttttt-ctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattct 116  Q
    |||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||| ||||    
T  5887792 tcagtgtactcaaagtttcatctgcttataaatcatcctttttttctgttactcttctcactccattcatttcataatttaatgcaacctattctgttct 5887693  T
Q  117 aaagctaa 124  Q
     |||||||    
T  5887692 taagctaa 5887685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 371
Target Start/End: Complemental strand, 5960734 - 5960544
Alignment:
Q  172 atatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaac 271  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||| | ||||||||    ||  |||||| ||||| || | |||  ||||||| ||     
T  5960734 atatttgtaatttc-agactttttgatcaaactaaggagaaaagaaa-ctagacatca----tgagacatcattcttgttgcaacaaacagaaggttaaa 5960641  T
Q  272 agaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatggacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||   || | || ||||||||||| ||||||| ||||||||    
T  5960640 agaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac---atggttgttggagttctgttccaaaacttgctggta 5960544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 5921524 - 5921386
Alignment:
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5921524 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatg 5921425  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||   || | || ||||||||||| ||||||| ||||||||    
T  5921424 gac---atggttgttggagttctgttccaaaacttgctggta 5921386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 5984944 - 5984806
Alignment:
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5984944 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatg 5984845  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||   || | || ||||||||||| ||||||| ||||||||    
T  5984844 gac---atggttgttggagttctgttccaaaacttgctggta 5984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 5949416 - 5949278
Alignment:
Q  230 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatg 329  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |  ||||| ||||    
T  5949416 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatagtacaacatatg 5949317  T
Q  330 gacaagattgctgctggagttctgtcccaaaacatgctggta 371  Q
    |||   || | || ||||||||||| ||||||| ||||||||    
T  5949316 gac---atggttgttggagttctgttccaaaacttgctggta 5949278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 5960900 - 5960804
Alignment:
Q  54 ccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattctaaagctaaagccaaagatataatatagagtttca 150  Q
    |||||| |||||||||||  |||  |||||| ||||| ||||||||||||  ||||||||||| || ||||||||||||||| || |||||| ||||    
T  5960900 ccttttctctgttactctgatcacaccattcttttcacaatttaatgcaacatgttctattcttaaactaaagccaaagatagaagatagagcttca 5960804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 5921705 - 5921591
Alignment:
Q  18 tcagtgtactcacagtttcatctgcgtataaatcacccttttttctgttactcttctcaatccattcatttcataatttaatgcaagctgttctattcta 117  Q
    |||||| ||||||||||||   ||| |||| |||| |||||| |||||| ||||  |||  |||||| ||||||||||||||||||  | |||||||||     
T  5921705 tcagtgcactcacagtttc---tgcatatatatcatccttttctctgttgctctgatcacaccattcttttcataatttaatgcaatatattctattctt 5921609  T
Q  118 aagctaaagccaaagata 135  Q
    || |||||||||||||||    
T  5921608 aaactaaagccaaagata 5921591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 5985061 - 5984990
Alignment:
Q  79 ccattcatttcataatttaatgcaagctgttctattctaaagctaaagccaaagatataatatagagtttca 150  Q
    |||||| ||||||||||||||||||  | ||||||||| |||||||||||||||||| || |||||| ||||    
T  5985061 ccattcttttcataatttaatgcaacatattctattcttaagctaaagccaaagatagaagatagagattca 5984990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 41351626 - 41351576
Alignment:
Q  261 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatca 311  Q
    ||||||| || ||||| || ||||| |||||||||||||||||||||||||    
T  41351626 agaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca 41351576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 5949529 - 5949480
Alignment:
Q  86 tttcataatttaatgcaagctgttctattctaaagctaaagccaaagata 135  Q
    |||| |||||||||||||  | ||||||||| ||||||||||||||||||    
T  5949529 tttcttaatttaatgcaacatattctattcttaagctaaagccaaagata 5949480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 42789192 - 42789098
Alignment:
Q  239 catcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatgacaacttatggaca 333  Q
    |||||||||||||| |  ||  ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||||||    
T  42789192 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggaca 42789098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 2590612 - 2590669
Alignment:
Q  261 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat 318  Q
    ||||||| || ||||| || |||||||||||||||||||| |||||||| | ||||||    
T  2590612 agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat 2590669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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