View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_13 (Length: 469)
Name: NF4045_low_13
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 45143811 - 45144254
Alignment:
| Q |
20 |
gaactaacccattttcattacaatcaacacacttaacaacaacagtgttcccctgtttctgtttattcaccatcttacagcttccgttacatcgaaaaca |
119 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45143811 |
gaactaacccattttcattacaatcaccacacttaacaacaacagtgttcccctgtttctgtttattcaccatcttacagcttccgttacatcgaaaaca |
45143910 |
T |
|
| Q |
120 |
aggcaagaatctcatatcaccacaaccctcacatacacctcctccaccaacagcttttcttggcaaaccctgaataacctctcccaacaaaccctcttcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45143911 |
aggcaagaatctcatatcaccacaaccctcacatacacctcctccaccaacagcttttcttggcaaaccctgaataacctctcccaacaaaccctcttcc |
45144010 |
T |
|
| Q |
220 |
acaaccttcaacatctcttcagcaccaccgatataatatcccttcacaaacactctcggcggaatcaccatcttctctttcagaagctccctcagttcct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45144011 |
acaaccttcaacatctcttcagcaccaccgatataatatcccttcacaaacactctcggcggaaccaccatcttctctttcagaagctccctcagttcct |
45144110 |
T |
|
| Q |
320 |
ctttaaacccactatccatcgaaacgtcacgctcgcatatttgtacaccaaatgcatcaaaagctgctctcaccgcattgcaagcctcaaatgtcctccg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144111 |
ctttaaacccactatccatcgaaacgtcacgctcgcatatttgtacaccaaatgcatcaaaagctgctctcaccgcattgcaagcctcaaatgtcctccg |
45144210 |
T |
|
| Q |
420 |
aacacctctcaacgttgttgtatagatcaccactttcttctctc |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144211 |
aacacctctcaacgttgttgtatagatcaccactttcttctctc |
45144254 |
T |
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