View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_14 (Length: 465)
Name: NF4045_low_14
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_14 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 41524009 - 41524473
Alignment:
| Q |
1 |
actcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaatcttacgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41524009 |
actcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccgagcaatatctcaatcttacgt |
41524108 |
T |
|
| Q |
101 |
ttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524109 |
ttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactc |
41524208 |
T |
|
| Q |
201 |
cagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcag |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524209 |
cagccaaaacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcag |
41524308 |
T |
|
| Q |
301 |
ctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaa |
400 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524309 |
ctccgaagcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcctccatcctcttttcattcaacttcctcaactccaaa |
41524408 |
T |
|
| Q |
401 |
atcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacata |
465 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524409 |
atcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacata |
41524473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 41515058 - 41515518
Alignment:
| Q |
1 |
actcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaatcttacgt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41515058 |
actcttcaaaagtttggtatcatcctccaaccccgaaagtcttccaagcagtcctttaaactttttgtacatagacccaagcaatatctcaatcttacgt |
41515157 |
T |
|
| Q |
101 |
ttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||| |||||||||| |||||||||| | |
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| T |
41515158 |
ttctcatcagccaacttactcttttctttccccaacctacttatagtttccttatatttcttcactatttccttcaattcgccatttttaacctcaaccc |
41515257 |
T |
|
| Q |
201 |
cagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcag |
300 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41515258 |
cagccaaagcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgccatcatctaaccatttcttcttcgatttcctcaa |
41515357 |
T |
|
| Q |
301 |
ctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41515358 |
ctccgaaacttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatcccccatcctcttttcattcaacttcctcaactccaaa |
41515457 |
T |
|
| Q |
401 |
atcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaa |
461 |
Q |
| |
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|| | || ||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
41515458 |
atttcagactctaattcaccattctttcttcttaacacataaatttcattgctaccatcaa |
41515518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 141 - 463
Target Start/End: Original strand, 41499389 - 41499711
Alignment:
| Q |
141 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
240 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || || || || |||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
41499389 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt |
41499488 |
T |
|
| Q |
241 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
340 |
Q |
| |
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| | | | ||||| ||||||||||||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||||||||| ||| |
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| T |
41499489 |
gcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctctt |
41499588 |
T |
|
| Q |
341 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
440 |
Q |
| |
|
| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||| | || |||| ||| || ||||| ||||||||||| |
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| T |
41499589 |
agcacaacaagttcattattatcctccagcatcttttcatttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacac |
41499688 |
T |
|
| Q |
441 |
caatttcatagctaccatcaaca |
463 |
Q |
| |
|
||| ||||| ||||||||||||| |
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| T |
41499689 |
caacttcattgctaccatcaaca |
41499711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 141 - 446
Target Start/End: Original strand, 41503582 - 41503887
Alignment:
| Q |
141 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
240 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || ||| || || |||||||| |||||||||||||||||| ||| ||||||| |
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|
| T |
41503582 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt |
41503681 |
T |
|
| Q |
241 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
340 |
Q |
| |
|
| | |||| ||||| |||| |||||| |||||| |||| |||||| | |||| | |||| ||||||||||||| |||||||||||||||| ||| |
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|
| T |
41503682 |
gcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaactccaaaacttcatgctctaatttaccaatcatttctctt |
41503781 |
T |
|
| Q |
341 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
440 |
Q |
| |
|
| |||| ||||||| ||||||||||||| | |||||||||| || |||||||||||||||| | || |||||| | |||| |||| ||||||||||||| |
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| T |
41503782 |
agcacaacaagttcgttattatcctccaccatcttttcatttaatttcctcaactccaaaacttcagactctagtttaccagtcttacttcttaacacat |
41503881 |
T |
|
| Q |
441 |
caattt |
446 |
Q |
| |
|
|||||| |
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|
| T |
41503882 |
caattt |
41503887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 41519327 - 41519439
Alignment:
| Q |
167 |
gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc |
266 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| |||| | | | |||| |||||| |||||| | |
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|
| T |
41519327 |
gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattac |
41519426 |
T |
|
| Q |
267 |
tatcatctaacca |
279 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41519427 |
tatcatctaacca |
41519439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 41503897 - 41504074
Alignment:
| Q |
105 |
catcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagc |
204 |
Q |
| |
|
|||||||||| || || |||||||||| |||| |||||||| ||||| ||| |||| ||| |||||| ||||| |||| || || || | |||| |
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|
| T |
41503897 |
catcagccaatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagc |
41503996 |
T |
|
| Q |
205 |
caaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt |
282 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| |||||| | |||| |||||| |||||| |||||||| |||||||| |
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|
| T |
41503997 |
caaatcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt |
41504074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 41503473 - 41503548
Alignment:
| Q |
17 |
gtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaa |
92 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||||||||| ||||| ||||| | ||||||||| ||||| |||| |
|
|
| T |
41503473 |
gtatcatcctccaaccttgaaactcttccagtcagtcctctgaactttttgtaaaaagacccaagtaatatatcaa |
41503548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 41702966 - 41702837
Alignment:
| Q |
320 |
aatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcac |
419 |
Q |
| |
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|||| ||||||||||||||| |||||||| | |||| ||| ||| ||| || |||| || |||||| |||||||||||| | | ||||| ||| |
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| T |
41702966 |
aattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaa |
41702867 |
T |
|
| Q |
420 |
cattctttcttcttaacacatcaatttcat |
449 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |
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|
| T |
41702866 |
caatctttcttcttaacacatcaacttcat |
41702837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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