View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_17 (Length: 423)
Name: NF4045_low_17
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 29074999 - 29074609
Alignment:
| Q |
17 |
agttttgactagtcacaccaaatattgaaatctttcattaagtgccaagaaaatcagccaaattaaaactgcctaacacaaacaaaagaaacgtttaatt |
116 |
Q |
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| T |
29074999 |
agttttgactagtcacaccaaatattgaaatctttcattaagtgtcaagaaaatcagccaaattaaaactgcctaacacaaacaaaagaaacgtttaatt |
29074900 |
T |
|
| Q |
117 |
cttactctatcaatgtggttattgttttcaaaatttctccatcttttgtgaatggtctataaaataacttcagcaaaatacttttgaaagggattgaaga |
216 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29074899 |
cttactctatcaatgtagttattgttttccaaatttctccatcttttgtgaatggtctataaaataacttcagcaaaatacttttgaaagggattgaaga |
29074800 |
T |
|
| Q |
217 |
aagcattagaagagaatttgcacggacctgattaccagctatcaggaatcttgcactcatgcaatcgacactttacaaatcgttagattaagattaaacg |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
29074799 |
aagcattagaagagaatttgcacggacctgattacaagctatcagaaatcttgcactcatgcaatcgacactttacaagttgttagattaagattaaacg |
29074700 |
T |
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| Q |
317 |
gtttatattataaatgtggtaaatacacatcttattatnnnnnnnttatctccacatggtctccacatgcatgcacccaacacagaacaca |
407 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
29074699 |
gtttatattacaaatgtggtaaatacacatcttattataaaaaaattatctccacacggtctccacatgcatgctcccaacacagaacaca |
29074609 |
T |
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