View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4045_low_20 (Length: 377)
Name: NF4045_low_20
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 50124270 - 50124641
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctttaatctgtaatttatttatgaaagtgagaatccttctaaaagttcatgccatatcttggcactaatttctca |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
50124270 |
ctttattggatatcaaagatttgttcttttatctttaatttatttatgaaagtctaaatccttctttaagttcatgccatatcttggcactaatttttca |
50124369 |
T |
|
| Q |
101 |
gacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggctaatattggattt-acatgactgataaatctgcagtgaatattat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50124370 |
gacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggctaatattggattttacatgactgataaatctgcagtgaatattat |
50124469 |
T |
|
| Q |
200 |
tgatattgtggaggnnnnnnncaaagttggagaatgagattggaaggggtgaatgaacaataatcttagaaggattggaatggaagtaccgatgttgtgt |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
50124470 |
tgatattgtggaggaaaaaaacaaagttggagaatgagattggaaggggtgaatgaacaataatctgagagggattggaatggaagtaccgatgttgtgt |
50124569 |
T |
|
| Q |
300 |
cagtctcatataactcaactactgggagacaaataaaaataatcaagtgtattttgcttatagtataatcta |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
50124570 |
cagtctcatataactcaactactgggagacaaataaaaataatctagtgtattttgcttatagtataatcta |
50124641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 8125541 - 8125686
Alignment:
| Q |
71 |
ttcatgccatatcttggcactaatttctcagacacatggacaattagtttaa--tataatgttag---attgaactagaacagtgaaggctaatattgga |
165 |
Q |
| |
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|||| |||||||||||||| | |||| ||| ||||||| |||| |||||||| | |||||| | ||||||||||||||||||| || || |||| |
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| T |
8125541 |
ttcaagccatatcttggcattgatttttcaaacacatgtacaactagtttaaactttaatgtaatgttattgaactagaacagtgaaagcaaaatttggt |
8125640 |
T |
|
| Q |
166 |
ttt-acatgactgataaatctgcagtgaatattattgatattgtgg |
210 |
Q |
| |
|
||| |||||||||||||||||||| | |||||| |||||||||||| |
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|
| T |
8125641 |
ttttacatgactgataaatctgcactaaatattgttgatattgtgg |
8125686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 39255280 - 39255648
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctttaatctgt--aatttatttatgaaagtgagaatccttctaaaagttcatgccatatcttggcactaatttct |
98 |
Q |
| |
|
||||||||||| |||||||| |||||||| || | | |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
39255280 |
ctttattggatatcaaagatttgttcttttatttttttaatttatttatgaaagtgtgaatccttctttaagttcatgccatatcttgtcactaattttt |
39255379 |
T |
|
| Q |
99 |
cagacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggctaatattggatttacatgactgataaatctgcagtgaatatta |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
39255380 |
cagacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggccaatattgaatttacatgactgataaatgtgcagtgaatatta |
39255479 |
T |
|
| Q |
199 |
ttgatattgtggaggnnnnnnncaaagttggagaatgagattggaaggggtgaatgaacaataatcttagaaggattggaatggaagtaccgatgttgtg |
298 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||| |||||||||||| |
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|
| T |
39255480 |
ttgatattgtggaggaaaaaaacagaggtggagaatgagattggaaggggtgaatgaacagtgatctgagagggattggaatggaaggaccgatgttgtg |
39255579 |
T |
|
| Q |
299 |
tcagtctcatataactcaactactgggagacaaataaaaataatcaagtgtattttgcttatagtataatcta |
371 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39255580 |
gctgtctcatataactcaactagtgggagac----aaaaataatcaagtgcattttgcttatagtataatcta |
39255648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 30962254 - 30962438
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctt-taatctgtaatttatttatgaaagtgagaatccttctaaaagttcatgccatatcttggcactaatttctc |
99 |
Q |
| |
|
||||||||||| |||||||| ||||||| || | | ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| || |
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|
| T |
30962254 |
ctttattggatatcaaagatttgttcttgtattttttaatttatttatgaaagtgtgaatccttctttaagttcatgccatatcttgggactaatttttc |
30962353 |
T |
|
| Q |
100 |
agacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggctaatattgga-tttacatgactgataaat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |
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|
| T |
30962354 |
agacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggccaatattgaattttacatgactgataaat |
30962438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 30962441 - 30962530
Alignment:
| Q |
278 |
aatggaagtaccgatgttgtgtcagtctcatataactcaactactgggagacaaataaaaataatcaagtgtattttgcttatagtataatcta |
371 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
30962441 |
aatggaaggaccgatgttgtggctgtctcgtataactcaactagtgggagac----aaaaataatcaagtgcattttgcttatagtataatcta |
30962530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 21219085 - 21218717
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctt-taatctgtaatttatttatgaaagtgagaatccttctaaaagttcatgccatatcttggcactaatttctc |
99 |
Q |
| |
|
||||||||||| |||||||| ||||||| || | | ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
21219085 |
ctttattggatatcaaagatttgttcttgtattttttaatttatttatgaaagtgtgaatccttctttaagttcatgccatatcttgggactaatttttc |
21218986 |
T |
|
| Q |
100 |
agacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggctaatattgga-tttacatgactgataaatctgcagtgaatatta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
21218985 |
agacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggccaatattggattttacatgactgataaatgtgtagtgaatatta |
21218886 |
T |
|
| Q |
199 |
ttgatattgtggaggnnnnnnncaaagttggagaatgagattggaaggggtgaatgaacaataatcttagaaggattggaatggaagtaccgatgttgtg |
298 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||| | |||| ||| ||||||||||| ||| |||||||||||| |
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|
| T |
21218885 |
ttgatattgtggaggaaaaaaacagaggtggagaatgagattggaaggggtgaatgaacagtgatctgagatggattggaatgaaaggaccgatgttgtg |
21218786 |
T |
|
| Q |
299 |
tcagtctcatataactcaactactgggagacaaataaaaataatcaagtgtattttgcttatagtataatcta |
371 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21218785 |
gctgtctcatataactcaactagtgggagac----aaaaataatcaagtgcattttgcttatagtataatcta |
21218717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 52744122 - 52743754
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctt-taatctgtaatttatttatgaaagtgagaatccttctaaaagttcatgccatatcttggcactaatttctc |
99 |
Q |
| |
|
||||||||||| |||||||| ||||||| || | | ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
52744122 |
ctttattggatatcaaagatttgttcttgtattttttaatttatttatgaaagtgtgaatccttctttaagttcatgccatatcttgggactaatttttc |
52744023 |
T |
|
| Q |
100 |
agacacatggacaattagtttaatataatgttagattgaactagaacagtgaaggctaatattgga-tttacatgactgataaatctgcagtgaatatta |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
52744022 |
agacacatggacaattagtttaataaaatgttagattgaactagaacagtgaaggccaatattggattttacatgactgataaatgtgcagtgaatatta |
52743923 |
T |
|
| Q |
199 |
ttgatattgtggaggnnnnnnncaaagttggagaatgagattggaaggggtgaatgaacaataatcttagaaggattggaatggaagtaccgatgttgtg |
298 |
Q |
| |
|
||||||||||||||| || || || ||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
52743922 |
ttgatattgtggaggaaaaaaacagaggtgaagaatgagattggaaggggtgaatgaacagtgatctgagagggattggaatggaaggaccgatgttgtg |
52743823 |
T |
|
| Q |
299 |
tcagtctcatataactcaactactgggagacaaataaaaataatcaagtgtattttgcttatagtataatcta |
371 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52743822 |
gctgtctcatataactcaactagtgggagac----aaaaataatcaagtgcattttgcttatagtataatcta |
52743754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 43426423 - 43426539
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctt-taatctgtaatttatttatgaaagtgagaatccttctaaaagttcatgccatatcttggcactaatttctc |
99 |
Q |
| |
|
||||||||||| |||||||| ||||||| || | | |||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
43426423 |
ctttattggatatcaaagatttgttcttgtattttttaatttatttataaaagtgtgaatccttctttaagttcatgccatatcttgggactaatttttc |
43426522 |
T |
|
| Q |
100 |
agacacatggacaatta |
116 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
43426523 |
agacacatggacgatta |
43426539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10819700 - 10819620
Alignment:
| Q |
1 |
ctttattggatgtcaaagatctgttctttaatctgtaatttatttatgaaagtgagaatccttctaaaagttcatgccatat |
82 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||| ||||| ||||||||||||| |||||||| | ||||||||||||||| |
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|
| T |
10819700 |
ctttattggatatcaaagatttgttcttttatctttaattgatttatgaaagtgtgaatcctt-tttaagttcatgccatat |
10819620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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