View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4045_low_23 (Length: 374)
Name: NF4045_low_23
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_23 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 36433160 - 36433506
Alignment:
| Q |
11 |
cacagataaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
36433160 |
cacagataaatagcaccgacgttatagctcaactatctgatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggatagctttga |
36433259 |
T |
|
| Q |
111 |
ttatcccacggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36433260 |
ttatcccacggacacttggcttccatatcaaaggcttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggatgaccct |
36433359 |
T |
|
| Q |
211 |
ggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36433360 |
ggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatg |
36433459 |
T |
|
| Q |
311 |
gagcactattatcaggtgtgcctaatgcgaaacgaaatagggacact |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36433460 |
gagcactattatcaggtgtgcctaatgcgaaacgaaatagggacact |
36433506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 36368532 - 36368819
Alignment:
| Q |
11 |
cacagataaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttga |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||| ||||| |
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|
| T |
36368532 |
cacagataaatagcaccaacgttatagctcaactatcggatataggaaaccttgttttgatgctaaaaagctccaaaactgtcatatgggaaagttttga |
36368631 |
T |
|
| Q |
111 |
ttatcccacggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccct |
210 |
Q |
| |
|
| |||| || || || | ||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||| |
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|
| T |
36368632 |
tcatcctacagataccttgcttccatatctcaaggttggttttgatagaaaaactaatcaaagctggtttctccaatcatggaagacagatgatgaccct |
36368731 |
T |
|
| Q |
211 |
ggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtg |
298 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| | |||| ||| ||||| | ||||||||||| ||| | ||||| ||||||||||||| |
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|
| T |
36368732 |
ggaaaaggcgcattcacattgaaattcagcagcattggaaaacctcagttgtttatgtacaaccatgatcttccttggtggcgtggtg |
36368819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 36403843 - 36404157
Alignment:
| Q |
31 |
gttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatcccacggacacttggc |
130 |
Q |
| |
|
|||||||| || |||| || |||| |||| ||||| ||||| |||||| || ||||||||||| ||||||||||||||| ||||||| ||||| | || |
|
|
| T |
36403843 |
gttatagcgaaattatcagacatagcaaaccttgttctgatgataaacaacacaaaaactgtcatctgggaaagctttgatcatcccacagacaccttgc |
36403942 |
T |
|
| Q |
131 |
ttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaaggtgccttcacgtt |
230 |
Q |
| |
|
||||||||| || | | || ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| | |
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|
| T |
36403943 |
ttccatatctaaagatagggtttaatagaaaaactaatcaaagctggttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggt |
36404042 |
T |
|
| Q |
231 |
gaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagcactattatcaggtgtg |
330 |
Q |
| |
|
| ||||||||||| |||||||| ||||| | ||||||||||| ||||||||||| |||||||||| || || ||||||||||| ||| || ||||||| |
|
|
| T |
36404043 |
ggaattcagcaccattggtaaacctcagttgtttatgtacaaccataaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgta |
36404142 |
T |
|
| Q |
331 |
cctaatgcgaaacga |
345 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
36404143 |
cctaatatgaaacga |
36404157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 57 - 320
Target Start/End: Original strand, 36396936 - 36397199
Alignment:
| Q |
57 |
aaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatcccacggacacttggcttccatatcaaagggttggttttgat |
156 |
Q |
| |
|
|||| ||||| ||||| |||||| || ||||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
36396936 |
aaacattgttctgatgataaacaacacaaaaactgtcatttgggaaagctttgatcatcccacagacaccttccttccatatcaaaggtttggttttgat |
36397035 |
T |
|
| Q |
157 |
agaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactc |
256 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||| | | |||| | ||| |
|
|
| T |
36397036 |
agaaaaactaatcaaagttggccccttcaatcctggaagacagaagatgaccctggaaaaggtgcattcacggtgaaattcagcagcataggtatacctc |
36397135 |
T |
|
| Q |
257 |
agctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagcactatt |
320 |
Q |
| |
|
|| | ||||||||||| ||||||||||| ||||||||||||| || |||||| ||||||||||| |
|
|
| T |
36397136 |
agttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatt |
36397199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 36411144 - 36411447
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||||||||||||| ||||| |
|
|
| T |
36411144 |
aaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagctttgatcatccc |
36411243 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| |||||| ||||||| | |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
36411244 |
acagacacaatgcttccgtatcaaaagattggttttgatagaaaaattaatcaaagttgggtccttcaatcctggaagacagatgatgaccctggaaaag |
36411343 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagcact |
317 |
Q |
| |
|
|||| |||||| |||||||||||||| |||| ||| | || | ||||||||||| ||| | | ||| ||||||||||||| || ||||||||||||| | |
|
|
| T |
36411344 |
gtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatgatcgtccttggtggcgtggtggacattggaatggagcaat |
36411443 |
T |
|
| Q |
318 |
atta |
321 |
Q |
| |
|
|||| |
|
|
| T |
36411444 |
atta |
36411447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 36416475 - 36416778
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||||||||||||| ||||| |
|
|
| T |
36416475 |
aaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagctttgatcatccc |
36416574 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| |||||| ||||||| | |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
36416575 |
acagacacaatgcttccgtatcaaaagattggttttgatagaaaaattaatcaaagttgggtccttcaatcctggaagacagatgatgaccctggaaaag |
36416674 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagcact |
317 |
Q |
| |
|
|||| |||||| |||||||||||||| |||| ||| | || | ||||||||||| ||| | | ||| ||||||||||||| || ||||||||||||| | |
|
|
| T |
36416675 |
gtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatgatcgtccttggtggcgtggtggacattggaatggagcaat |
36416774 |
T |
|
| Q |
318 |
atta |
321 |
Q |
| |
|
|||| |
|
|
| T |
36416775 |
atta |
36416778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 31 - 315
Target Start/End: Original strand, 36387126 - 36387411
Alignment:
| Q |
31 |
gttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatcccacggacacttggc |
130 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||| ||||||||||||||||| |||| || ||||| | || |
|
|
| T |
36387126 |
gttatagctcaactatcggatatagcaaaccttgttttgatgataaacaacaccaaaactgtattatgggaaagctttgatcatccaacagacaccttgc |
36387225 |
T |
|
| Q |
131 |
ttccatatcaaagggttggttttgat-agaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaaggtgccttcacgt |
229 |
Q |
| |
|
||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |
|
|
| T |
36387226 |
ttccatatctaaggcttggttttgataaaaaaaactaatcaaagctggttccttcaatcctggaagacggatgatgaccctggaaatggtgcattcacag |
36387325 |
T |
|
| Q |
230 |
tgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagca |
315 |
Q |
| |
|
|||||||||||||| |||| ||| |||| | || |||||||| ||| | ||||| |||||||| |||| || |||||| |||||| |
|
|
| T |
36387326 |
tgaaattcagcaccattggcaaacctcaagtgttaatgtacaaccatgatcttccttggtggcgcggtggacattggaacggagca |
36387411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 36373155 - 36373452
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
36373155 |
aaatagcaccagggttatagctcaattatcggatgtagcaaaccttgttctgatgataaacaacaccaaaactgtattatgggaaagctttgatcatcca |
36373254 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| | ||||||||||| || | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
36373255 |
acagacaccttgcttccatatctaaagattgggtttaatagaaaaactaatcaaagctggttccttcaatcctggaagacagatgatgaccctggaaatg |
36373354 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagca |
315 |
Q |
| |
|
|||| ||||| ||||||||| || | ||| ||| ||||| | ||||||||||| ||| | |||| ||||||||||||| || |||||| |||||| |
|
|
| T |
36373355 |
gtgcattcacagtgaaattcaacagcattgtcaaacctcagttgtttatgtacaaccatgattttccatggtggcgtggtggacattggaacggagca |
36373452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 36425310 - 36425564
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||||||||| ||| ||||| |
|
|
| T |
36425310 |
aaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagcttggatcatccc |
36425409 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| |||||||||| || | |||||||||||||||||| ||||||||| |||||||||||||| |||||||| || || ||||||||||||| |
|
|
| T |
36425410 |
acagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccgacgatgaccctggaaaag |
36425509 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
272 |
Q |
| |
|
|||| ||||| ||||||||||||| |||| ||| | ||| | ||||||||||| |
|
|
| T |
36425510 |
gtgcgttcaccgtgaaattcagcacaattggcaaaccgcagttgtttatgtacaa |
36425564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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