View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_24 (Length: 353)
Name: NF4045_low_24
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 18169310 - 18169579
Alignment:
| Q |
18 |
ggtggtacactgtgattctaccaaactcactgtcaatccaaaaatgtacttagaattatgattgaagcaaattttaatcatgatatcacattatatatgt |
117 |
Q |
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| T |
18169310 |
ggtggtacactgtcattctaccaaacacactgtcaatccaaaaatgtacttagaattatgattgaatcaagttttattcatgatatcacattatatatgt |
18169409 |
T |
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| Q |
118 |
tacctcaatttgttcattaagtttcctttctacttccatttgcatttctagagcatgagatatctccatgtttctggcaaaaatagaatttgaaaataaa |
217 |
Q |
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| T |
18169410 |
tacctcaatttgttcattaagtttcctttctacttccatttgcatttctagagcatgagatatctccatgtttctggcaaaaatagaatttgaaaataaa |
18169509 |
T |
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| Q |
218 |
at-tttagctaataccatttcaatctaaaattattctgtcgaaaaaatcataataaaatatttgataaaa |
286 |
Q |
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| T |
18169510 |
atctctagctaataccatttcaatctaaaattattttgtcgaaaaaaccttaataaaatatttgataaaa |
18169579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 18169583 - 18169661
Alignment:
| Q |
266 |
ataataaaatatttgataaaa-gctctaattattactcagtgatttgattatggtccccttgaatgatttctctgctgc |
343 |
Q |
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| T |
18169583 |
ataataaaatatttgataaaaagctctaattattactcagtgatttgattatggtccccttgaccgatttctctgctgc |
18169661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 31748688 - 31748739
Alignment:
| Q |
108 |
ttatatatgttacctcaatttgttcattaagtttcctttctacttccatttg |
159 |
Q |
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| T |
31748688 |
ttataaatgttacctcaatttgttcataaagtttcttttgtacttccatttg |
31748739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31502192 - 31502156
Alignment:
| Q |
23 |
tacactgtgattctaccaaactcactgtcaatccaaa |
59 |
Q |
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| T |
31502192 |
tacaccgtgattctgccaaactcactgtcaatccaaa |
31502156 |
T |
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