View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_25 (Length: 353)
Name: NF4045_low_25
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 184 - 346
Target Start/End: Complemental strand, 6012104 - 6011942
Alignment:
| Q |
184 |
cctctctgaaaatatgagataacaaaaagttcatagattttagtaaagtgagacaattaagccatttgtttttgatctgccatggaacaatctgaggaga |
283 |
Q |
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| T |
6012104 |
cctctctgaaaatatgagataacaaaaagttcatagatttcagtaaagtgagacaattaagccatttgtttttgatctgccatggaacaatctgaggaga |
6012005 |
T |
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| Q |
284 |
cttgactgccaaggtaaccagtttagagtcactttctatccataagttcagccaattcctttg |
346 |
Q |
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| T |
6012004 |
cttgactgccaaggtaaccagtttagagtcactttctatccataagttcagccaattcctttg |
6011942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 6012218 - 6012103
Alignment:
| Q |
21 |
ggggaccaaaccaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaatatgtaaaggtgcagagg |
120 |
Q |
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| T |
6012218 |
ggggaccaaaccaaaccctcaaaatgttaggaaaatctatagaatcgaagacctagcctattcttaactaagtcttctctaatttgtaaaggtgcagagg |
6012119 |
T |
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| Q |
121 |
accaccattgaaagcc |
136 |
Q |
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| T |
6012118 |
accaccattgaaagcc |
6012103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 7232309 - 7232006
Alignment:
| Q |
22 |
gggaccaaaccaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaatatgtaaaggtgcagagga |
121 |
Q |
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| T |
7232309 |
gggacaaaaccaacccctcaatatgtaaggaaaa-ctataatatggaagacctagcctattcttaactaaatcatctctaatctgcatagctggaaagga |
7232211 |
T |
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| Q |
122 |
ccaccattgaaagccattatgagtactacctagtgcagctagcttatatgcacagtgattaccctctctgaaaatatgagataacaaaaagttcatagat |
221 |
Q |
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| T |
7232210 |
ccatcattgaaaggcatt---------------tgcaactaacatatatgtacagtgattgccctctctgaagatgtgagataacaaaaagttcatagat |
7232126 |
T |
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| Q |
222 |
tttagtaaagtgagacaattaa-gccatttgtttttgatctgccatggaacaatctgaggagacttgactgccaaggtaaccagtttagagtcactttct |
320 |
Q |
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|| | |||||| |||||||||| ||||| |||||||||| ||||| ||||||| || ||||||||||||||||||||||| |||||||||||||||| | |
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| T |
7232125 |
ttcactaaagtaagacaattaaagccatctgtttttgatatgccaatgaacaatttgtggagacttgactgccaaggtaactagtttagagtcacttttt |
7232026 |
T |
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| Q |
321 |
atccataagttcagccaatt |
340 |
Q |
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| T |
7232025 |
atccataagttcagccaatt |
7232006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 48949323 - 48949262
Alignment:
| Q |
30 |
accaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaa |
91 |
Q |
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| T |
48949323 |
accaaaccctcaaaatgttaagacaatctataacatagaaaacctagtctattcttagctaa |
48949262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 28462680 - 28462794
Alignment:
| Q |
20 |
gggggaccaaaccaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaatatgtaaaggtgcagag |
119 |
Q |
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||||||| ||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
28462680 |
gggggacaaaaccaaactctctaaatattaggaaaatctatagaatggaaaacctagcctatttttaactaagtcttctctaat---caaaggtgcagag |
28462776 |
T |
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| Q |
120 |
gaccaccattgaaagcca |
137 |
Q |
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| T |
28462777 |
gaccaccattgaaagcca |
28462794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 4718212 - 4718285
Alignment:
| Q |
30 |
accaaaccctcaaaatgttaggaaaatctatagaatggaagacctagcctattcttaactaagtcttctctaat |
103 |
Q |
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| T |
4718212 |
accaaaccctcaaaatgttaagacaatctataacatagaagacctagtctatacttaaccaaatcttcactaat |
4718285 |
T |
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