View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_27 (Length: 320)
Name: NF4045_low_27
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 36312370 - 36312676
Alignment:
| Q |
1 |
tcatcagggtattcttcaaattctcccattagaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagcca |
100 |
Q |
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| T |
36312370 |
tcatcagggtattcttcaaattctcccattagaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagcca |
36312469 |
T |
|
| Q |
101 |
atgaagacaaattgggaggcaaaatctttaactcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataat |
200 |
Q |
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| T |
36312470 |
atgaagataaattgggaggcaaaatctttaactcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataat |
36312569 |
T |
|
| Q |
201 |
catagcttgcacatgaacaagcttctgagccaaaacaagaataccaacaatggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312570 |
catagcttgcacatgaacaagcttctgagccaaaacaggaataccaacaatggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgc |
36312669 |
T |
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| Q |
301 |
tcttcat |
307 |
Q |
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||||||| |
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| T |
36312670 |
tcttcat |
36312676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 292
Target Start/End: Original strand, 36289917 - 36290178
Alignment:
| Q |
31 |
agaagaatctttctcaaggaatctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaagacaaattgggaggcaaaatcttta |
130 |
Q |
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|||||||||||| | | |||||||| |||| | || |||||||| ||||||| |||||||||||| | ||||| ||||| | ||| ||| ||| || |
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| T |
36289917 |
agaagaatctttttgagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctcta |
36290016 |
T |
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| Q |
131 |
actcatgtacactattataaagcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaacaagcttctgagc |
230 |
Q |
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|||||| | || || | |||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
36290017 |
actcatttgcattagaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaacaagcttctgagc |
36290116 |
T |
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| Q |
231 |
caaaacaagaataccaacaatggatttgtcaatcttagaaagaagtgagtgagactcaaaca |
292 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36290117 |
taaaacaggaataccaacaatggttttgtcaatcttagaaagaagtgagtgagactcaaaca |
36290178 |
T |
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