View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_28 (Length: 316)
Name: NF4045_low_28
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 17348156 - 17347860
Alignment:
| Q |
1 |
aaatgttggtttacttgacacacacattcggcgtatacggttagaacatgttctaaaaaatcgcaaagccactctagggagaggattcttgtttaaaaga |
100 |
Q |
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| T |
17348156 |
aaatgttggtttacttgacacacacattcggcgtatacagttagaacgtgttctaaaaaatcgcaaagccactcttgggagaggagtcttgtttaaaaga |
17348057 |
T |
|
| Q |
101 |
ggtggaagtcaaattatgaaggcttacaccgatgttgattatgtaggtacaatgagtgatagaatatataactcaagctatagtacctatttgtgttgaa |
200 |
Q |
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| T |
17348056 |
ggtggaagttaaattatgaaggcttacactgatgttgattatgtaggtacaatgagtgatagaagatatacctcaagctatagtacctatttgtgttgaa |
17347957 |
T |
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| Q |
201 |
accttgttgcttaaatgagtaaaaagaaaaacgtagttgctcaatgaagtgctaaagcttaattcaaagctatgacaaaagaaatttgtgaactatt |
297 |
Q |
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| T |
17347956 |
accttgttgcttaaatgagtaaaaagaaaaacgtagttgctcaatgaagtgctaaagcttaattcaaagctatgacagaagaaatttgtgaactatt |
17347860 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 27471404 - 27471471
Alignment:
| Q |
94 |
taaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatgtaggtacaatgagtgata |
161 |
Q |
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| T |
27471404 |
taaaagaggtggaagtctaactatgaaggcttacaccaatgctgattatgcaggtttattgagtgata |
27471471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 13857013 - 13857068
Alignment:
| Q |
88 |
cttgtttaaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatg |
143 |
Q |
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| T |
13857013 |
cttgtttaaaagaggtggaagtctaactgtggaggcttacaccgatgctgattatg |
13857068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 27470157 - 27470210
Alignment:
| Q |
65 |
aaagccactctagggagaggattcttgtttaaaagaggtggaagtcaaattatg |
118 |
Q |
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| T |
27470157 |
aaagtcactccaaggagaggactcttgtttaaaagaggtggaagtctaattatg |
27470210 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 30996379 - 30996475
Alignment:
| Q |
64 |
caaagccactctagggagaggattcttgtttaaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatgtaggtacaatgagtgata |
161 |
Q |
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||||| ||||| ||||| | || ||||||| | |||||||||||||| || ||| |||||||||| ||||||||||| |||| |||||||||||| |
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| T |
30996379 |
caaagtcactccagggatatgactcttgtt-acaagaggtggaagtctaactatagaggcttacactaatgttgattatacaggttcaatgagtgata |
30996475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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