View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_29 (Length: 315)

Name: NF4045_low_29
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_29
NF4045_low_29
[»] chr3 (5 HSPs)
chr3 (1-305)||(29074251-29074555)
chr3 (31-305)||(48099599-48099872)
chr3 (31-122)||(20620278-20620369)
chr3 (70-177)||(34013575-34013682)
chr3 (49-130)||(4185971-4186052)
[»] scaffold0655 (1 HSPs)
scaffold0655 (1-305)||(5851-6154)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-305)||(40581-40884)
[»] chr2 (2 HSPs)
chr2 (65-305)||(1586399-1586638)
chr2 (149-305)||(40620867-40621022)
[»] chr8 (3 HSPs)
chr8 (20-297)||(40270581-40270857)
chr8 (28-218)||(31342863-31343053)
chr8 (31-216)||(23583824-23584009)
[»] chr1 (8 HSPs)
chr1 (37-305)||(24209813-24210080)
chr1 (37-305)||(45029590-45029857)
chr1 (37-300)||(45034441-45034703)
chr1 (31-305)||(9932317-9932590)
chr1 (31-138)||(44387175-44387282)
chr1 (51-305)||(19329838-19330090)
chr1 (82-216)||(7324530-7324664)
chr1 (265-305)||(44387408-44387448)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-297)||(31682-31958)
[»] chr6 (2 HSPs)
chr6 (37-305)||(33165829-33166096)
chr6 (1-297)||(16594430-16594725)
[»] chr5 (1 HSPs)
chr5 (40-297)||(1546095-1546351)
[»] chr4 (1 HSPs)
chr4 (70-130)||(19337035-19337095)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 29074555 - 29074251
Alignment:
Q  1 ttacatttatcactattctccatcacaaagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||    
T  29074555 ttacatttatcactattccccatcacaaagcttatctcctacactgacgctgattggggtgaatgtcctgacaccagacgttccacatctgggtactgtg 29074456  T
Q  101 tttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29074455 tttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgttgaagccgaaaatagagatgttgttaatgttgt 29074356  T
Q  201 atctgagtcatgttggattcataatatttttactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacct 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29074355 atttgagtcatgttggattcataatatttttactagaactttatttccctattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacct 29074256  T
Q  301 ctctg 305  Q
    |||||    
T  29074255 ctctg 29074251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 305
Target Start/End: Complemental strand, 48099872 - 48099599
Alignment:
Q  31 cttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggt 130  Q
    ||||||||||| | ||| ||||||||| ||| |||||| |||||| | |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||    
T  48099872 cttatctcctatactgatgctgattggggtggatgtccagacacccgtcgttctacctctggctattgtgtgtttcttggtgacaacctcatctcctggt 48099773  T
Q  131 tttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttt 230  Q
     ||||||    || ||||| || || || |||||||| ||||| ||  | || | ||||| |||||| |||||||| || |||||| ||| |||   ||     
T  48099772 cttccaagcgacaacccacactttcgcgctctagtgcagaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggcttcgtaa-ccttc 48099674  T
Q  231 tactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    |  | |||||| |||||||| |  |||| |  ||||||||||||||||| |||||||||| ||| ||||| ||||    
T  48099673 tcttggaacttcatttcccactctctcaagctactttggtgtattgtgataatgttagtgccatttacctttctg 48099599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 20620278 - 20620369
Alignment:
Q  31 cttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcat 122  Q
    ||||||||||||| ||| ||||||||| ||| ||||||||||||  |  |||| || ||||| || ||||| ||||||||||||||||||||    
T  20620278 cttatctcctacactgatgctgattggggtggatgtcctgacactcgttgttcgacctctggctattgtgtgtttcttggtgacaacctcat 20620369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 34013575 - 34013682
Alignment:
Q  70 gacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgctg 169  Q
    ||||||||||| ||||| |||||||||||||| |||||||| || ||||| || |||||||  || |||  |||||||||  | || || |||||||| |    
T  34013575 gacaccagacggtctacttctggatactgtgtctttcttggagataacctgatatcttggtcatctaaacggcagcccaccttatcccgatctagtgccg 34013674  T
Q  170 aagccgaa 177  Q
    ||||||||    
T  34013675 aagccgaa 34013682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 4186052 - 4185971
Alignment:
Q  49 gctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggt 130  Q
    ||||||||| |||  || || ||||||||||||||||| ||||| |||||| | |||||||| || ||||| || |||||||    
T  4186052 gctgattggggtgggtgccccgacaccagacgttctacttctggctactgtatctttcttggagataacctgatatcttggt 4185971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 6154 - 5851
Alignment:
Q  1 ttacatttatcactattctccatcacaaagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtg 100  Q
    ||||||||||||| || | ||||||||||| |||||||||||| ||||| ||||||| ||| ||||| ||||||||||| ||| ||| || | || ||||    
T  6154 ttacatttatcaccatcccccatcacaaagattatctcctacactgacgttgattggggtggatgtcttgacaccagacattccacagctcggtattgtg 6055  T
Q  101 tttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgt 200  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||    
T  6054 tttttcttggtgacaaccttatctcttggtcttccaaaaggcagcccactctctctcggtctagtgttgaagccgaatatagaggtgttgctaatgttgt 5955  T
Q  201 atctgagtcatgttggattcataatatttttactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacct 300  Q
    |||||||||||||||||||  |||   ||||||| |||||| ||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  5954 atctgagtcatgttggatttgtaa-ccttttactggaacttcatttccctattcctcaagccactttggtgtattgtgacaatgttagtgtcatctatct 5856  T
Q  301 ctctg 305  Q
    |||||    
T  5855 ctctg 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 40581 - 40884
Alignment:
Q  1 ttacatttatcactattctccatcacaaagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtg 100  Q
    ||||||||||||| || | |||||||||||||| |||||||||  |||||||||||| ||  ||||||||| ||| |||||||||||||||| |||||||    
T  40581 ttacatttatcaccatcccccatcacaaagcttctctcctacacggacgctgattggggtagatgtcctgatacccgacgttctacatctgggtactgtg 40680  T
Q  101 tttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgt 200  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||  || ||||||||||||||| |||||| ||||| |||||||||    
T  40681 tttttcttggtgacaaccttatctcttggtcttccaaaaggcagcccactctctctcactccagtgctgaagccgaatatagaggtgttgctaatgttgt 40780  T
Q  201 atctgagtcatgttggattcataatatttttactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacct 300  Q
    |||||||||||||||||||| |||   ||||| | || ||| |||| || |||||||| | ||||||||||||||||||||||||||||| ||| || ||    
T  40781 atctgagtcatgttggattcgtaa-ccttttattggagcttcattttcctattcctcaggccactttggtgtattgtgacaatgttagtgccatttatct 40879  T
Q  301 ctctg 305  Q
    |||||    
T  40880 ctctg 40884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 65 - 305
Target Start/End: Complemental strand, 1586638 - 1586399
Alignment:
Q  65 gtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctag 164  Q
    |||||||||| |||||||| |||||||  |||||||||||||||||||||||||| |||||||||| |||||||| ||| || |||||||||| ||||||    
T  1586638 gtcctgacactagacgttccacatctgagtactgtgtttttcttggtgacaaccttatctcttggtcttccaaaaggcaacctactctctctcagtctag 1586539  T
Q  165 tgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactagaactttatttcccaattcctcatgtcac 264  Q
    ||||||||| ||| |||||| ||||| ||||||||||| |||||| |||||||||| ||||  ||||||| |||||| ||||||| |||||||||| |||    
T  1586538 tgctgaagctgaatatagaggtgttgctaatgttgtatatgagtcttgttggattcgtaat-cttttactggaacttcatttccctattcctcatggcac 1586440  T
Q  265 tttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  1586439 tttggtgtattgtgacaatgttagtgtcatctatctctctg 1586399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 305
Target Start/End: Original strand, 40620867 - 40621022
Alignment:
Q  149 ctctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactagaactttatttcc 248  Q
    |||||||||| ||||||| |||||||||| ||| ||   ||| ||||||||||| |||||||| |||| ||| |||  |||| ||| || ||| |||| |    
T  40620867 ctctctctcgttctagtgttgaagccgaatataaaggccttgctaatgttgtatttgagtcatattggcttcgtaacctttt-actggagcttcattttc 40620965  T
Q  249 caattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    | ||||| || |  || ||||||||||||||||||||||||||||| || |||||||    
T  40620966 ccattccccaggatacgttggtgtattgtgacaatgttagtgtcatttatctctctg 40621022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 40270857 - 40270581
Alignment:
Q  20 ccatcacaaagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacct 119  Q
    |||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  40270857 ccattacaaagcttatctcctacactgacgctgattggggtggatgtcctgacaccagacgttctacatctggttattgtgtttttctaggtgacaacct 40270758  T
Q  120 catctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggatt 219  Q
     || ||||||| |||||||  |||||| |||||||| || |||||||||||||| ||| |||||| |||||  |||||||| ||||| || |||||||||    
T  40270757 tatttcttggtcttccaaacggcagccaactctctcccgttctagtgctgaagctgaatatagaggtgttgcaaatgttgtctctgaatcgtgttggatt 40270658  T
Q  220 cataatatttttactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatcta 297  Q
    |  ||| || || || |||||  |||| || |||| ||| | |||||||||||||| |||||||||||||| ||||||    
T  40270657 cgcaatcttctt-ctggaactccattttcctattcatcaggccactttggtgtattatgacaatgttagtgccatcta 40270581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 31342863 - 31343053
Alignment:
Q  28 aagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctctt 127  Q
    ||||| ||||| |||| |||| |||| ||| ||| ||||| || ||| ||||| || ||||| || ||||||||||||||  | ||||| || |||||||    
T  31342863 aagctgatctcttacattgactctgactggggtggatgtcatgtcactagacgctccacatccgggtactgtgtttttctcagcgacaatcttatctctt 31342962  T
Q  128 ggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggat 218  Q
    ||| ||| |||| |||||| | ||||||||| ||||||| |||||| ||| |||||  |||||| |||||||| ||||| | |||||||||    
T  31342963 ggtcttcaaaaaggcagcctattctctctcgttctagtgttgaagctgaatatagaagtgttgtgaatgttgtgtctgaattatgttggat 31343053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 23583824 - 23584009
Alignment:
Q  31 cttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggt 130  Q
    ||||||||||| | ||| ||||||| | ||| ||||||||||||| | |||||||| ||||| || ||||| ||||||||||| |||||||| || ||||    
T  23583824 cttatctcctatactgatgctgattcgggtggatgtcctgacacccgtcgttctacttctggctattgtgtatttcttggtgataacctcatttcctggt 23583923  T
Q  131 tttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttgg 216  Q
     |||||| |  || ||||| || ||||||||||||||  |||| ||  | || | ||||| |||||| |||||||| || ||||||    
T  23583924 cttccaagagacaacccacactttctcggtctagtgcaaaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttgg 23584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 305
Target Start/End: Original strand, 24209813 - 24210080
Alignment:
Q  37 tcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttcca 136  Q
    ||||||| |||||| |||||| ||| ||||||||||||| ||||||| || |||||||||||||| ||||| ||||||||||||||| ||||||  ||||    
T  24209813 tcctacactgacgccgattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctcca 24209912  T
Q  137 aaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactag 236  Q
    | |  || ||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| ||||||||||||||| ||| ||||  | ||||| |    
T  24209913 agagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaat-ctcttactgg 24210011  T
Q  237 aactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    | ||  | || || |||||||| |  |||||||||||||||||||||||||||| ||||||||| ||||    
T  24210012 agctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatctg 24210080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 37 - 305
Target Start/End: Original strand, 45029590 - 45029857
Alignment:
Q  37 tcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttcca 136  Q
    ||||||| |||| | |||||| ||| ||||||||||||| ||||||| || |||||||||||||| ||||| ||||||||||||||| ||||||  ||||    
T  45029590 tcctacactgactccgattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctcca 45029689  T
Q  137 aaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactag 236  Q
    | |  || ||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| ||||||||||||||| ||| ||||  | ||||| |    
T  45029690 agagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaat-ctcttactgg 45029788  T
Q  237 aactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    | ||  | || || |||||||| |  |||||||||||||||||||||||||||| ||||||||| ||||    
T  45029789 agctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatctg 45029857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 300
Target Start/End: Original strand, 45034441 - 45034703
Alignment:
Q  37 tcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttcca 136  Q
    ||||||| |||| | |||||| ||| ||||||||||||| ||||||| || |||||||||||||| ||||| ||||||||||||||| ||||||  ||||    
T  45034441 tcctacactgacaccgattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctcca 45034540  T
Q  137 aaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactag 236  Q
    | |  || ||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| ||||||||||||||| ||| ||||  | ||||| |    
T  45034541 agagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaat-ctcttactgg 45034639  T
Q  237 aactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacct 300  Q
    | ||  | || || |||||||| |  |||||||||||||||||||||||||||| |||||||||    
T  45034640 agctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacct 45034703  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 305
Target Start/End: Complemental strand, 9932590 - 9932317
Alignment:
Q  31 cttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggt 130  Q
    ||||||||||| | ||| ||||||||| ||| |||||| |||||| | |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||    
T  9932590 cttatctcctatactgatgctgattggggtggatgtccagacacccgtcgttctacctctggctattgtgtgtttcttggtgacaacctcatctcctggt 9932491  T
Q  131 tttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttt 230  Q
     ||||||    || ||||| || || || |||||||| ||||| ||  | || | ||||| |||||| |||||||| || |||||| ||| |||   ||     
T  9932490 cttccaagcgacaacccacactttcgcgctctagtgcagaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggcttcgtaa-ccttc 9932392  T
Q  231 tactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    |  | |||||| |||||||| |  |||| |  ||||||||||||||||| |||||||||| ||| ||||| ||||    
T  9932391 tcttggaacttcatttcccactctctcaagctactttggtgtattgtgataatgttagtgccatttacctttctg 9932317  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 44387175 - 44387282
Alignment:
Q  31 cttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggt 130  Q
    ||||||||||||| ||| ||||||||| ||| ||||||||||||| | ||||| ||  |||| || ||||| |||||||||||||||||||| |||||||    
T  44387175 cttatctcctacactgatgctgattggggtggatgtcctgacacccgtcgttcgaccgctggctattgtgtgtttcttggtgacaacctcatttcttggt 44387274  T
Q  131 tttccaaa 138  Q
     |||||||    
T  44387275 cttccaaa 44387282  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 305
Target Start/End: Original strand, 19329838 - 19330090
Alignment:
Q  51 tgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttccaaaatgcagcccact 150  Q
    ||||||| ||| |||||| |||||  |||| || |||||||  || ||| ||||||| ||| ||||||| |||||||||| |||||||| | |||| |||    
T  19329838 tgattggggtggatgtcccgacactcgacgctcaacatctgagtattgtctttttctcggtaacaaccttatctcttggtcttccaaaaggaagcc-act 19329936  T
Q  151 ctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactagaactttatttccca 250  Q
    || ||||| |||||||||||| | ||| |||| | |||||  ||  |||| || || |||||||||||||| |||| || || | || ||| | || ||     
T  19329937 ctttctcgttctagtgctgaaactgaatataggggtgttgcaaactttgtctccgaatcatgttggattcacaata-ttctattggagcttcactttccc 19330035  T
Q  251 attcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    |||||||| ||||||  ||| |||||||||||||||||||  |||||||| ||||    
T  19330036 attcctcaagtcactccggtatattgtgacaatgttagtgctatctacctatctg 19330090  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 7324664 - 7324530
Alignment:
Q  82 tctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaata 181  Q
    ||||| ||||| || ||||| |||||||||||||| ||  |||| |||| |||||||   || |||||  | ||||| |||||||||||||||||| |      
T  7324664 tctacgtctggttattgtgtatttcttggtgacaatctactctcatggtcttccaaacgccaacccacattatctcgctctagtgctgaagccgaatacc 7324565  T
Q  182 gagatgttgttaatgttgtatctgagtcatgttgg 216  Q
    ||| |||||  ||||| ||||||||||| ||||||    
T  7324564 gaggtgttgccaatgtcgtatctgagtcttgttgg 7324530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 44387408 - 44387448
Alignment:
Q  265 tttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    ||||||||||||||| |||||||||| ||||||||| ||||    
T  44387408 tttggtgtattgtgataatgttagtgccatctacctttctg 44387448  T

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Target: scaffold0009 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 31682 - 31958
Alignment:
Q  20 ccatcacaaagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacct 119  Q
    |||| ||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  31682 ccattacatagcttctctcctacactgacgctgattggggtggatgtcctgacaccagacgttctacatctgtatactgtgtttttctaggtgacaacct 31781  T
Q  120 catctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggatt 219  Q
     || ||||||| |||||||| |||||| |||||||| |  |||||||||||||| ||| || ||| |||||  |||||| | ||||| || |||| ||||    
T  31782 tatttcttggtcttccaaaaggcagccaactctctcccattctagtgctgaagctgaatatcgaggtgttgcaaatgttatctctgaatcgtgttagatt 31881  T
Q  220 cataatatttttactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatcta 297  Q
    |  ||| || || || |||||  |||| || |||||||| |  |||||||||||||||||||||||||||| ||||||    
T  31882 cgcaatcttctt-ctggaactccattttcctattcctcaggcaactttggtgtattgtgacaatgttagtgccatcta 31958  T

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Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 37 - 305
Target Start/End: Original strand, 33165829 - 33166096
Alignment:
Q  37 tcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttcca 136  Q
    ||||||| |||||| |||||| ||| ||||||||||||| ||||||| || |||||||||||||| ||||| ||||||||||||||| ||||||  ||||    
T  33165829 tcctacactgacgccgattggggtggatgtcctgacacctgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctcca 33165928  T
Q  137 aaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactag 236  Q
    | |  || ||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| ||||||||||||||| ||| ||||  | ||||  |    
T  33165929 agagacaacccactctctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaat-ctcttacagg 33166027  T
Q  237 aactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatctacctctctg 305  Q
    | ||  | || || |||||||| |  |||||||||||||||||||||||||||| ||||||||| ||||    
T  33166028 agctccactttcctattcctcaggctactttggtgtattgtgacaatgttagtgccatctacctatctg 33166096  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 16594430 - 16594725
Alignment:
Q  1 ttacatttatcactattctcc-atcacaaagcttatctcctacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgt 99  Q
    ||||||||||||| || |||| || |||||| | |||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||||||| ||||||    
T  16594430 ttacatttatcaccat-ctcctattacaaagttgatctcctacactgacgctgattggggtggatgtcctgacactagacggtctacatctggttactgt 16594528  T
Q  100 gtttttcttggtgacaacctcatctcttggttttccaaaatgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttg 199  Q
    |||||||| ||||||||||| || ||||||| |||||||| ||| || |||||||| || |||||||||||||||||| |||| |  ||||  |||||||    
T  16594529 gtttttctaggtgacaaccttatttcttggtcttccaaaaggcaacctactctctcccgttctagtgctgaagccgaatataggggagttgcaaatgttg 16594628  T
Q  200 tatctgagtcatgttggattcataatatttttactagaactttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatcta 297  Q
    | || || || ||||||||||  |||  || | ||||||||  |||| || |||||| | | ||||||||||||||||||||||||||||| ||||||    
T  16594629 tttccgaatcgtgttggattcgcaat-cttctcctagaactccattttcctattcctgaggccactttggtgtattgtgacaatgttagtgccatcta 16594725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 297
Target Start/End: Complemental strand, 1546351 - 1546095
Alignment:
Q  40 tacaatgacgctgattggagtgaatgtcctgacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggttttccaaaa 139  Q
    |||| ||||| ||||||| ||| |||||||||||| ||||| || |||||||| |||||||||||||| | |||||| || |||||||||| ||||||||    
T  1546351 tacactgacgttgattggggtggatgtcctgacactagacgctccacatctgggtactgtgtttttctcgatgacaatcttatctcttggtcttccaaaa 1546252  T
Q  140 tgcagcccactctctctcggtctagtgctgaagccgaaaatagagatgttgttaatgttgtatctgagtcatgttggattcataatatttttactagaac 239  Q
     |||| | ||||| ||||| |||||||||||||| ||| |||||| |||||  |||||||| ||||| || || |||| ||  ||  || || || ||      
T  1546251 ggcagtctactctttctcgttctagtgctgaagctgaatatagaggtgttgcgaatgttgtctctgaatcctgctggactcgcaaccttctt-ctggagt 1546153  T
Q  240 tttatttcccaattcctcatgtcactttggtgtattgtgacaatgttagtgtcatcta 297  Q
    || |||| || |||||||||| |||| |||| ||||||||||||||||||| ||||||    
T  1546152 ttcattttcccattcctcatgccactctggtatattgtgacaatgttagtgccatcta 1546095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 19337095 - 19337035
Alignment:
Q  70 gacaccagacgttctacatctggatactgtgtttttcttggtgacaacctcatctcttggt 130  Q
    ||||||||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||||    
T  19337095 gacaccagacggtctacttctggctactgtgtctttcttggagataacctgatatcttggt 19337035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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