View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_3 (Length: 711)

Name: NF4045_low_3
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_3
NF4045_low_3
[»] chr1 (1 HSPs)
chr1 (19-699)||(48500860-48501540)


Alignment Details
Target: chr1 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 19 - 699
Target Start/End: Complemental strand, 48501540 - 48500860
Alignment:
Q  19 agaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaaaccagagcccattgcatggatcatagactcg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501540 agaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaaaccagagcccattgcatggatcatagactcg 48501441  T
Q  119 cacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttggttatgcgcttgcgacgcgcctagcgaagcaggttcactct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  48501440 cacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttggctatgtgcttgcgacgcgcctagcgaagcaggttcactct 48501341  T
Q  219 atttccactcgttactcgctccggttctagaaactgcgttgtcaaagaaactagcttcggtgctaagaaccttctttattaccgtaggtgtagacactga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501340 atttccactcgttactcgctccggttctagaaactgcgttgtcaaagaaactagcttcggtgctaagaaccttctttattaccgtaggtgtagacactga 48501241  T
Q  319 actctgtttcatgcgcacccttgggtacataatagcaaaatggtgcattataagagaattgggtgtaggattacaaacactcgtgccatcgaatccgaaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501240 actctgtttcatgcgcacccttgggtacataatagcaaaatggtgcattataagagaattgggtgtaggattacaaacactcgtgccatcgaatccgaaa 48501141  T
Q  419 ttctcttacgcgacggagtctcatggtttttggattctgaaaggctacgcgccggttatgacgatgaaactggcgagaaactatgggcaaaatggtaaat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501140 ttctcttacgcgacggagtctcatggtttttggattctgaaaggctacgcgccggttatgacgatgaaactggcgagaaactatgggcaaaatggtaaat 48501041  T
Q  519 ttcaaggtattgatgctaaggagtcaataatcaggtacggtctagctcaccaccaattggaagcacacgtgcagttggaatatacagttggattttatga 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501040 ttcaaggtattgatgctaaggagtcaataatcaggtacggtctagctcaccaccaattggaagcacacgtgcagttggaatatacagttggattttatga 48500941  T
Q  619 tggattcattcgggttaatacacgtgttgataatatgcgtctccatgtggcgaggttaggttttaaacacggtgatgatgt 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500940 tggattcattcgggttaatacacgtgttgataatatgcgtctccatgtggcgaggttaggttttaaacacggtgatgatgt 48500860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University