View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_30 (Length: 304)
Name: NF4045_low_30
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 6490296 - 6490014
Alignment:
| Q |
1 |
tgtaagcaatgtcatgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttagtaatcaacatttttgtaagag |
100 |
Q |
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| T |
6490296 |
tgtaagcaatgtcatgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttagtaatcaacatttttgtaagag |
6490197 |
T |
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| Q |
101 |
aacaaatattaatggaaatggcttataacttataagcaaaaaaggacaaaaattagtgttaacttcacatgtagagttccttggcatcatactctagatt |
200 |
Q |
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| T |
6490196 |
aacaaat------ggaaatggcttataacttatcagcaaagaaggacaaaaattagtgttaacttcacatgtagagttccttggcatcatactctagatt |
6490103 |
T |
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| Q |
201 |
cttatagtgcaatactactaaaatccagaaaaataatttgacaaagtttgcagaatgctttaaattatgtaaagtataatctcataact |
289 |
Q |
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| T |
6490102 |
cttatagtgcaatactactaaaatccagaaaaataatttgacaaagtttgcagaatgctttaaattatgtaaagtataatctcataact |
6490014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 38700401 - 38700677
Alignment:
| Q |
14 |
atgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttagtaatcaacatttttgtaagagaacaaatattaat |
113 |
Q |
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| T |
38700401 |
atgatgtttaagataacaaaattcaggcttctaacataaattaaagaagaaccaataaggatttagtaatcaacatttttgtaagagaacaagt------ |
38700494 |
T |
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| Q |
114 |
ggaaatggcttataacttataagcaaaaaaggacaaaaattagtgttaacttcac--------atgtagagttccttggcatcatactctagattcttat |
205 |
Q |
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| T |
38700495 |
ggaaatggcttataacttatcaacaaagaaggacgaaaaatagtgttaacttcacataatcacatgtagagttccttggcatcatactctagattcttgt |
38700594 |
T |
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| Q |
206 |
agtgcaatactactaaaatccagaaaaataatttgacaaagtttgcagaatgctttaaattatgtaaagtataatctcataact |
289 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38700595 |
agtccaatactactaaaatccagaaaaataatttgacaaag-ttgcagaatgccttaaattatgtaaagtataatctcataact |
38700677 |
T |
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