View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_31 (Length: 295)
Name: NF4045_low_31
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 50123794 - 50123971
Alignment:
| Q |
17 |
acttttatcccacagtccagcgcaagatagaaatccccacctaatgcagcagacaattgagccaagtaattatttcactcttccctttcacttctttctt |
116 |
Q |
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| T |
50123794 |
acttttatcccacagtccagcgcgagatagaaatccccacctaatgcag---acaattgagccaagtaattatttcactcttccctttcatttctttctt |
50123890 |
T |
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| Q |
117 |
cctctatccaacgctcaattcccttcctttcatcataccctccggtgggagaccttaatagatctcctacggtatgagaca |
197 |
Q |
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| T |
50123891 |
cctctatccaacgctcaattcccttcctttcatcatacccttcggtgggagaccttaataggtctcctacggtaggagaca |
50123971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 50124015 - 50124084
Alignment:
| Q |
217 |
ataagggttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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| T |
50124015 |
ataagggttgatcaacctttggattataaaagtttatgagtcttactatatgc-tatcaacactcaataat |
50124084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 53874084 - 53874040
Alignment:
| Q |
112 |
ttcttcctctatccaacgctcaattcccttcctttcatcataccc |
156 |
Q |
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| T |
53874084 |
ttcttcctctatccaacgctcaattcccttcctttcatcataccc |
53874040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 51123712 - 51123760
Alignment:
| Q |
17 |
acttttatcccacagtccagcgcaagatagaaatccccacctaatgcag |
65 |
Q |
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| T |
51123712 |
acttttatcccacagtccagcgcgggatagaaatccccacctaatgcag |
51123760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 53874019 - 53873979
Alignment:
| Q |
77 |
gccaagtaattatttcactcttccctttcacttctttcttc |
117 |
Q |
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| T |
53874019 |
gccaagtaattatttcactctcccctttcacttctttcttc |
53873979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 30961867 - 30961937
Alignment:
| Q |
215 |
agataagggttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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| T |
30961867 |
agataaggattgatcaacctttggattataaaagtctat-agtcttactatat-cctatcaacactcaataat |
30961937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 39254902 - 39254964
Alignment:
| Q |
224 |
ttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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| T |
39254902 |
ttgatcaacctttggattataaaagtctacgagtcttactatat-cctatcaaccctcaataat |
39254964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 52744484 - 52744414
Alignment:
| Q |
215 |
agataagggttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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| T |
52744484 |
agataaggattgatcaacctttggattataaaagtctat-agtcttactatat-cctatcaacactcaataat |
52744414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 21219469 - 21219399
Alignment:
| Q |
215 |
agataagggttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||| |
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| T |
21219469 |
agataaggattgattaacctttggattataaaagtctat-agtcttactatat-cctatcaacactcaataat |
21219399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 43426039 - 43426107
Alignment:
| Q |
217 |
ataagggttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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| T |
43426039 |
ataaggattgatcaacctttggattataaaagtctat-agtcttactatat-cctatcaacactcaataat |
43426107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 10820062 - 10819998
Alignment:
| Q |
222 |
ggttgatcaacctttggattataaaagtttatgagtcttactatatgcttatcaacactcaataat |
287 |
Q |
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| T |
10820062 |
ggttgatcaacctttggattataaaagtctatgagtcgtactatatac-catcaacactcaataat |
10819998 |
T |
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