View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_32 (Length: 295)
Name: NF4045_low_32
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 3820970 - 3820760
Alignment:
| Q |
12 |
atgaagagttgattgaatgttgaaaagtcgtaagaggagagagagaatgaagagttgattggatgttcaaaagttaatgatgtctaaatatcattgttga |
111 |
Q |
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| T |
3820970 |
atgaagagttgattgaatgttgaaaagtcgtaagaggagagagagaatgaagagttgattggatgttcaaaagttaatgatgtctaaatatcattgttga |
3820871 |
T |
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| Q |
112 |
tttacaatttgtnnnnnnntattctatatttatttattataataagaaataaaaagtgaaaattagaaccatgcataagatataatgaatgcttaaaatc |
211 |
Q |
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| T |
3820870 |
tttacaatttgtaaaaaaatattctatatttatttattataataagaaataaaaagtgaaaattagaaccatgcataagatataatgaatgcttaaaatc |
3820771 |
T |
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| Q |
212 |
agctttacgtg |
222 |
Q |
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| T |
3820770 |
agccttacgtg |
3820760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 3820980 - 3820943
Alignment:
| Q |
48 |
gagagagagaatgaagagttgattggatgttcaaaagt |
85 |
Q |
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| T |
3820980 |
gagagagagaatgaagagttgattgaatgttgaaaagt |
3820943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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