View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_34 (Length: 252)
Name: NF4045_low_34
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 54396865 - 54396636
Alignment:
| Q |
5 |
caaaggggaaaccatcttctaaagttgaccatacagaggcattcaagttagattttttcactatggatgatctttatgtagggaacgtaatgacgctgca |
104 |
Q |
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| T |
54396865 |
caaaagggaaaccatcttctaaagttgaccatacagaggcattcaagttagcttttttcactatggatgatctttatgtagggaacgtaatgacgctgca |
54396766 |
T |
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| Q |
105 |
atttcctatcagagaatatgctaacttcttgccnnnnnnngtagctgactacattcctttctccaagtcacaactaccaagccttcttcaaatattctct |
204 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
54396765 |
atttcctgtcagagaatatgctaacttcttgccaaaaaaagtagctgactacattcctttctccaagtcacaactaccaagccttcttcaactcttctct |
54396666 |
T |
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| Q |
205 |
ctcacaaaagattccccccaaggtgaagac |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
54396665 |
ctcacaaaagattccccccaaggtgaagac |
54396636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 54381973 - 54381753
Alignment:
| Q |
13 |
aaaccatcttctaaagttgaccatacagaggcattcaagttagattttttcactatggatgatctttatgtagggaacgtaatgacgctgcaatttccta |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
54381973 |
aaactatcttctaaagttgaccatacagaggcattcaagttagctttttttactctggatgatctttacgtagggaatgtaatgaccctgcaatttccta |
54381874 |
T |
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| Q |
113 |
tcagagaatatgctaacttcttgccnnnnnnngtagctgactacattcctttctccaagtcacaactaccaagccttcttcaaatattctctctcacaaa |
212 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||| |||||||| |
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| T |
54381873 |
tcagagaatatgctcgcttcttgccaagaaaagtagctgactacattcctctctccaagtcgcaactacctagccttcttcaactattctcactcacaaa |
54381774 |
T |
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| Q |
213 |
agattccccccaaggtgaaga |
233 |
Q |
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||| || |||||||||||||| |
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| T |
54381773 |
agactctccccaaggtgaaga |
54381753 |
T |
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Back To:
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