View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4045_low_38 (Length: 250)
Name: NF4045_low_38
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 42535995 - 42535765
Alignment:
| Q |
19 |
gttataccctccaaagcctctgtaactgacannnnnnnagatgaatcaatgcactccaaagcttttgtagcattaattttcgccacacatttccccgata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535995 |
gttataccctccaaagcctctgtaactgacatttttttagatgaatcaatgcactccaaagcttttgtagcattaattttcgccacacatttccccgata |
42535896 |
T |
|
| Q |
119 |
agatgttgctcacattgatggaacctatcacattggtaaccatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggttctgatcacttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535895 |
agatgttgctcacattgatggaacctatcacattggtaaccatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggttctgatcacttgt |
42535796 |
T |
|
| Q |
219 |
tatgtaattgttgtttttgaagtctggatgc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42535795 |
tatgtaattgttgtttttgaagtctggatgc |
42535765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 42530241 - 42530064
Alignment:
| Q |
57 |
agatgaatcaatgcactccaaagcttttgtagcattaattttcgccacacatttccccgataagatgttgctcacattgatggaacctatcacattggta |
156 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
42530241 |
agatgaatcaatgcactccaaagcttttgcagcattaattttcgccacacatttccccgacaagatgctgctcacattgatggaacctaccgcattggtt |
42530142 |
T |
|
| Q |
157 |
accatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggttctgatcacttgttatgtaattgttgttt |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42530141 |
tccttcgattgatcttcagagtcatccctgcagtaagaaatgatcaggttctgatcacttgttatgtaattgtggttt |
42530064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 27826073 - 27826012
Alignment:
| Q |
82 |
tttgtagcattaattttcgccacacatttccccgataagatgttgctcacattgatggaacc |
143 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
27826073 |
tttgcagcattaattttcgccacacatttccctgtcaagatgttgctcacattgatggaacc |
27826012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 27825863 - 27825787
Alignment:
| Q |
158 |
ccatcgattgatcttcagagtcatccctgcagtaagaaatgatcaggttctgatcacttgttatgtaattgttgttt |
234 |
Q |
| |
|
||||| ||||||||||||| ||| | ||||||| || || ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
27825863 |
ccatccattgatcttcagattcagctttgcagtacgatataatcaggtcctgatcacttgttatgtatatgttgttt |
27825787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University