View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_40 (Length: 249)

Name: NF4045_low_40
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_40
NF4045_low_40
[»] chr6 (2 HSPs)
chr6 (1-232)||(6274026-6274258)
chr6 (1-37)||(34573283-34573319)
[»] chr8 (1 HSPs)
chr8 (1-38)||(4350766-4350803)
[»] chr3 (1 HSPs)
chr3 (5-38)||(11383588-11383621)
[»] scaffold0531 (1 HSPs)
scaffold0531 (5-37)||(9699-9731)
[»] chr2 (2 HSPs)
chr2 (1-37)||(28226841-28226877)
chr2 (1-41)||(40877020-40877060)
[»] chr1 (1 HSPs)
chr1 (2-38)||(1153820-1153856)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 6274026 - 6274258
Alignment:
Q  1 ataatactaactactaaattaaaataataattttggtgtccttgtaaaactgtgccctaggcgcggccgtccctcctgcccacaatgtagatcaactcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6274026 ataatactaactactaagttaaaataataattttggtgtccttgtaaaactgtgccctaggcgcggccgtccctcctgcccacgatgtagatcaactcat 6274125  T
Q  101 -gagtcaagagttaagacgtctaaggagtttgagaaattggttcaagttcaaatcttagcttcttagataatatgtgaatattaaacttcgtccttaaat 199  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6274126 tgagtcaagagttaagacgtctaaggagtttgagaaattggttcaagttcaaatcttagcttcttagataatatgtgaatattaaacttcgtccttgaat 6274225  T
Q  200 atgtaaccatcaatcaacttctttgaatttttt 232  Q
    |||||||||||||||||||||||||||||||||    
T  6274226 atgtaaccatcaatcaacttctttgaatttttt 6274258  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34573283 - 34573319
Alignment:
Q  1 ataatactaactactaaattaaaataataattttggt 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  34573283 ataatattaactactaaataaaaataataattttggt 34573319  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4350766 - 4350803
Alignment:
Q  1 ataatactaactactaaattaaaataataattttggtg 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  4350766 ataatactaactactaaataaaaataataattttggtg 4350803  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 11383621 - 11383588
Alignment:
Q  5 tactaactactaaattaaaataataattttggtg 38  Q
    ||||||||||||||| ||||||||||||||||||    
T  11383621 tactaactactaaataaaaataataattttggtg 11383588  T

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Target: scaffold0531 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 9731 - 9699
Alignment:
Q  5 tactaactactaaattaaaataataattttggt 37  Q
    ||||||||||||||| |||||||||||||||||    
T  9731 tactaactactaaataaaaataataattttggt 9699  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28226841 - 28226877
Alignment:
Q  1 ataatactaactactaaattaaaataataattttggt 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  28226841 ataatattaactactaaataaaaataataattttggt 28226877  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40877020 - 40877060
Alignment:
Q  1 ataatactaactactaaattaaaataataattttggtgtcc 41  Q
    |||||||||||||| || | |||||||||||||||||||||    
T  40877020 ataatactaactaccaagtaaaaataataattttggtgtcc 40877060  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 1153820 - 1153856
Alignment:
Q  2 taatactaactactaaattaaaataataattttggtg 38  Q
    |||||||||||||||||| |||||||||||| |||||    
T  1153820 taatactaactactaaataaaaataataattgtggtg 1153856  T

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