View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_41 (Length: 243)
Name: NF4045_low_41
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 35402674 - 35402568
Alignment:
| Q |
127 |
gggctgcaaagggagcatatacatcggtagcaaagcctcgacgaacaagtttcatacaatacaccacc-aaccacaatataaataaaatattagtagagc |
225 |
Q |
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| T |
35402674 |
gggctgcaaagggagcatatacatcggtagaaaagcctcgacgaacaagtttcaaacaatacaccaccaaaccacaatataaataaaatattagtagagc |
35402575 |
T |
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| Q |
226 |
ccttcat |
232 |
Q |
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||||||| |
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| T |
35402574 |
ccttcat |
35402568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35402800 - 35402735
Alignment:
| Q |
1 |
gatacccttgaaggtacaaccttaaattgttttcaatatttgattgatttgctttctaatacaaac |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35402800 |
gatacccttgaaggtacaaccttaaattgttttcaatatttgactgatttgctttctaatacaaac |
35402735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35391703 - 35391638
Alignment:
| Q |
1 |
gatacccttgaaggtacaaccttaaattgttttcaatatttgattgatttgctttctaatacaaac |
66 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||| ||||| |
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| T |
35391703 |
gatacccttgaaggtatgaccttaaattgtttttaatatttgatcgattagctttctaatgcaaac |
35391638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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