View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_48 (Length: 222)

Name: NF4045_low_48
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_48
NF4045_low_48
[»] chr8 (9 HSPs)
chr8 (12-222)||(5843005-5843215)
chr8 (12-222)||(5849747-5849957)
chr8 (12-210)||(5887144-5887342)
chr8 (40-210)||(5949036-5949206)
chr8 (40-210)||(5984564-5984734)
chr8 (39-210)||(5960300-5960471)
chr8 (48-210)||(5921152-5921314)
chr8 (133-180)||(41351226-41351273)
chr8 (102-183)||(39916637-39916718)
[»] chr2 (2 HSPs)
chr2 (116-189)||(42788990-42789063)
chr2 (153-189)||(27172818-27172854)
[»] chr7 (1 HSPs)
chr7 (128-193)||(45676080-45676145)
[»] chr3 (2 HSPs)
chr3 (128-188)||(34626700-34626760)
chr3 (133-183)||(44674039-44674089)
[»] chr5 (2 HSPs)
chr5 (133-183)||(1281333-1281383)
chr5 (133-183)||(1319335-1319385)
[»] chr1 (3 HSPs)
chr1 (133-183)||(16127411-16127461)
chr1 (133-183)||(16138921-16138971)
chr1 (128-180)||(51044474-51044526)
[»] chr4 (1 HSPs)
chr4 (131-183)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5843005 - 5843215
Alignment:
Q  12 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843005 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 5843104  T
Q  112 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatataa 211  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5843105 agagaaacttccacgttttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacctagacacatcatgatataa 5843204  T
Q  212 ataaatgaacc 222  Q
    |||||||||||    
T  5843205 ataaatgaacc 5843215  T

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Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5849747 - 5849957
Alignment:
Q  12 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849747 atgaaaataacattggaggaaaagaagaagagcaattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 5849846  T
Q  112 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatataa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  5849847 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacctagacatatcatgatataa 5849946  T
Q  212 ataaatgaacc 222  Q
    |||||||||||    
T  5849947 ataaatgaacc 5849957  T

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Target: chr8; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 5887144 - 5887342
Alignment:
Q  12 atgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcata 111  Q
    |||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||     
T  5887144 atgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatg 5887243  T
Q  112 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  5887244 agagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccgcatctctgcagacctacacacatcatgatata 5887342  T

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Target: chr8; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 5949036 - 5949206
Alignment:
Q  40 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 139  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5949036 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5949135  T
Q  140 cttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  5949136 cttagataatttatccatcttaatcttcaactctttccacatctctgcagacctacacatatcatgatata 5949206  T

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Target: chr8; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 5984564 - 5984734
Alignment:
Q  40 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 139  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5984564 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5984663  T
Q  140 cttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  5984664 cttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacatatcatgatata 5984734  T

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Target: chr8; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 5960300 - 5960471
Alignment:
Q  39 aagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcagg 138  Q
    |||||||| ||||||| |||||||||||||||| |||| |||| ||||||| ||||| |||||||||||  | |||||||||||||||||||||||||||    
T  5960300 aagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatcagg 5960399  T
Q  139 tcttagataatttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  5960400 tcttagataatttatccatcttaatctacaactctttccacatctctccagacctacacacatcatgatata 5960471  T

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Target: chr8; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 5921152 - 5921314
Alignment:
Q  48 tgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagata 147  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  148 atttatccatcttaatctacaactctttccacatctctgcagacctagacacatcatgatata 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatata 5921314  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 41351226 - 41351273
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccaca 180  Q
    ||||||||| | |||||||||||||||||||| ||||||||| |||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccaca 41351273  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 39916718 - 39916637
Alignment:
Q  102 cttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    ||||||| | || |||| ||||||| || | ||||||||| |||||||| |||||||| ||||| || || |||||||||||    
T  39916718 cttcttcgtgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 42788990 - 42789063
Alignment:
Q  116 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcag 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |||||||||||||||||    
T  42788990 aaacttccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcag 42789063  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 27172818 - 27172854
Alignment:
Q  153 tccatcttaatctacaactctttccacatctctgcag 189  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27172818 tccatcttaatctgcaactctttccacatctttgcag 27172854  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 45676080 - 45676145
Alignment:
Q  128 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgcagacct 193  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 45676145  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 34626700 - 34626760
Alignment:
Q  128 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgca 188  Q
    |||||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctttgca 34626760  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||| |||| ||||||| |||||||||| ||||||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 1319335 - 1319385
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||| |||||||||||  ||||||| | |||||||||||||||||||||    
T  1319335 atcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    ||||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 16138921 - 16138971
Alignment:
Q  133 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    ||||||| ||| ||| || |||||||| |||||||||||||||||||||||    
T  16138921 atcaggttttaaatagttaatccatctcaatctacaactctttccacatct 16138971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 51044526 - 51044474
Alignment:
Q  128 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccaca 180  Q
    ||||||||||| || | ||| ||||||||||| |||||||| |||||||||||    
T  51044526 ttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 51044474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  131 aaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 183  Q
    |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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