View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_5 (Length: 644)

Name: NF4045_low_5
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_5
NF4045_low_5
[»] chr2 (1 HSPs)
chr2 (19-632)||(1839287-1839906)


Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 632
Target Start/End: Complemental strand, 1839906 - 1839287
Alignment:
Q  19 ataaacttatatttggattttatctcatc-----aaatatagagctctctttcctcnnnnnnnnnnnnnnnntatagagctcttaacataaaaggctgca 113  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||||                ||||||||||||||||||||||||||||    
T  1839906 ataaacttatatttggattttatctcatctcatcaaatatagagctctctttcctcaaaaacaaaaacaaaatatagagctcttaacataaaaggctgca 1839807  T
Q  114 nnnnnnnn-ctacctcaaccatgatttttatgctctaatattttgtttaa-aaacatttacgtaaataatcaaaatataaataaccttccattaaattca 211  Q
             ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839806 tttttttttctacctcaaccatgattttaatgctctaatattttgtttaacaaacatttacgtaaataatcaaaatataaataaccttccattaaattca 1839707  T
Q  212 agtacacatannnnnnnng---aaaacaatttatattgcggggtaccaaattattgatgagtagggaacgtggtgtaagcaatggcgtatgcgtgcgtgt 308  Q
    ||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839706 agtacacatatatattttttttaaaacaatttatattgcggggtaccaaattattgatgagtagggaacgtggtgtaagcaatggcgtatgcgtgcgtgt 1839607  T
Q  309 atacaaaaatatagtactaatttctgtgatgtgtgcataggtcgcaagtcgcaatggaaaaaatgatgggcaaataagagcccaacgtgaatttgtcaac 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  1839606 atacaaaaatatagtactaatttctgtgatgtgtgcataggtcgcaaatcgcaatggaaaaaattatgggcaaataagaccccaacgtgaatttgtcaac 1839507  T
Q  409 caaaacaaaagtcccaacgtgaaagaattatattaat--aaatgttgatgattaatttagtctttatccaatgaatgagaggatggcggttatgtagtct 506  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1839506 caaaacaaaagtcccaacgtgaaagaattatattaataaaaatgttgatgattaatttagtctttatccaatgaat--gaggatggcggttatgtagtct 1839409  T
Q  507 ggcattccaatttgactatgactagactctactcttcccggcctaaagttttttgacccaaaatagtannnnnnnaacaagctttttgactcagtttttg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||    
T  1839408 ggcattccaatttgactatgactagactctactcttcccggcctaaagttttttgacccaaaatatt----ttttaacaagctttttgactcagtttttg 1839313  T
Q  607 gttatgccttttgggttaataatatt 632  Q
    ||||||||||||||||||||||||||    
T  1839312 gttatgccttttgggttaataatatt 1839287  T

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