View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4045_low_54 (Length: 202)

Name: NF4045_low_54
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4045_low_54
NF4045_low_54
[»] chr8 (2 HSPs)
chr8 (68-103)||(14336984-14337019)
chr8 (68-103)||(23602156-23602191)
[»] chr7 (8 HSPs)
chr7 (68-103)||(7342915-7342950)
chr7 (68-103)||(16281547-16281582)
chr7 (68-103)||(16295751-16295786)
chr7 (68-103)||(17453262-17453297)
chr7 (68-103)||(17463974-17464009)
chr7 (68-103)||(17589205-17589240)
chr7 (68-103)||(48296440-48296475)
chr7 (68-103)||(12594519-12594555)
[»] chr6 (1 HSPs)
chr6 (68-103)||(12391953-12391988)
[»] chr4 (2 HSPs)
chr4 (68-103)||(55789856-55789891)
chr4 (68-102)||(40816834-40816868)
[»] chr3 (1 HSPs)
chr3 (68-103)||(13554443-13554478)
[»] chr5 (2 HSPs)
chr5 (68-103)||(346198-346233)
chr5 (68-103)||(360833-360868)


Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 14336984 - 14337019
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  14336984 ggagatgatatacctttgtgggagagtagaagaaag 14337019  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 23602156 - 23602191
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  23602156 ggagatgatatacctttgtgggagagtagaagaaag 23602191  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 7342915 - 7342950
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  7342915 ggagatgatatacctttgtgggagagtagaagaaag 7342950  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 16281547 - 16281582
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  16281547 ggagatgatatacctttgtgggagagtagaagaaag 16281582  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 16295751 - 16295786
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  16295751 ggagatgatatacctttgtgggagagtagaagaaag 16295786  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 17453262 - 17453297
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17453262 ggagatgatttacctttgtgggagagtagaagaaag 17453297  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 17464009 - 17463974
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17464009 ggagatgatttacctttgtgggagagtagaagaaag 17463974  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 17589205 - 17589240
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17589205 ggagatgatttacctttgtgggagagtagaagaaag 17589240  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 48296440 - 48296475
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48296440 ggagatgatatacttttgtgggagagtagaagaaag 48296475  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 12594555 - 12594519
Alignment:
Q  68 ggagatgatataccttt-gtgggagagtagaagaaag 103  Q
    ||||||||||||||||| |||||||||||||||||||    
T  12594555 ggagatgatataccttttgtgggagagtagaagaaag 12594519  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 12391988 - 12391953
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  12391988 ggagatgatatacctttgtgggagagtagaagaaag 12391953  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 55789891 - 55789856
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  55789891 ggagatgatatacctttgtgggagagtagaagaaag 55789856  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 40816834 - 40816868
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaa 102  Q
    |||||||||||||||||||||||||||||||||||    
T  40816834 ggagatgatatacctttgtgggagagtagaagaaa 40816868  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 13554478 - 13554443
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  13554478 ggagatgatatacctttgtgggagagtagaagaaag 13554443  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 346198 - 346233
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    |||||||||||||| |||||||||||||||||||||    
T  346198 ggagatgatatacccttgtgggagagtagaagaaag 346233  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 360833 - 360868
Alignment:
Q  68 ggagatgatatacctttgtgggagagtagaagaaag 103  Q
    |||||||||||||| |||||||||||||||||||||    
T  360833 ggagatgatatacccttgtgggagagtagaagaaag 360868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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