View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_8 (Length: 574)
Name: NF4045_low_8
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 557
Target Start/End: Original strand, 28808521 - 28809067
Alignment:
| Q |
11 |
aagaatatagtaatatattgagttaataaaactctcccatgtttgaactattgctcgtcctctagcaattagcttagatagaaaatactttttaaacgag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28808521 |
aagaatatagtaatatattgagttaataaaactctcccatgtttgaactattgctcgtcctctagcaattagcttagatagaaaatactttttaaacgag |
28808620 |
T |
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| Q |
111 |
cattgcataaagacaaaagaatatagattcaaaagaatagaggttcaacaatcaaggggtcataatcctaaattccaaattagaatcttttgatccttta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28808621 |
cattgcataaagacaaaagaatatagattcaaaagaatagaggttcaacaatcaaggggtcataatcctaaattccaaattagaatcttttgatccttta |
28808720 |
T |
|
| Q |
211 |
agtaacatgtcctcaagagcgtaaggaaaactagtagtattttgtttgaagatgagaccttttccttggttcattgcttcattttcttggatgcaaagct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28808721 |
agtaacatgtcctcaagagcgtaaggaaaactagtagtattttgtttgaagatgagaccttttccttggttcattgcttcattttcttggatgcaaagct |
28808820 |
T |
|
| Q |
311 |
catagtttgtctttacttcatttatgcatgatgaagctttggtatgtgatgtgtatggatgggcatgaaatttttgtaaagtttgagggttaattttttg |
410 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28808821 |
catagtttgtctttacttcctttatgcatgatgaagctttggcatgtgatgtgtatggatgggcatgaaatttttgtaaagtttgagggttaattttttg |
28808920 |
T |
|
| Q |
411 |
ttacaaccgtagcctagtgttacggttggtcgtaaccctctctggattttgtatgtaaggaaaatttgggaagggtcgtgtatatttgtgtcattacgac |
510 |
Q |
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| T |
28808921 |
ttacaaccgtagcctaatgttacggttggtcgtaaccctctctggattttgtatgtaaggaaaatttgggaagggtcgtgtatatttgtgtcattacgac |
28809020 |
T |
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| Q |
511 |
catagtctaggatcacaattggccttaatgatttttggaagtttatg |
557 |
Q |
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| T |
28809021 |
catagtctaggatcacagttgaccttaatgatttttggaagtttatg |
28809067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 31865794 - 31865748
Alignment:
| Q |
419 |
gtagcctagtgttacggttggtcgtaaccctctctggattttgtatg |
465 |
Q |
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| T |
31865794 |
gtagcctagtgtgacggttggccgcaaccctctctggattttgtatg |
31865748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 3051408 - 3051364
Alignment:
| Q |
151 |
aggttcaacaatcaaggggtcataatcctaaattccaaattagaa |
195 |
Q |
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| T |
3051408 |
aggtttaacaatcaaggggtcatcatccaaaatttcaaattagaa |
3051364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 20065344 - 20065388
Alignment:
| Q |
151 |
aggttcaacaatcaaggggtcataatcctaaattccaaattagaa |
195 |
Q |
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||||| ||||||||||||||||| |||| ||||| |||||||||| |
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| T |
20065344 |
aggtttaacaatcaaggggtcatcatccaaaattacaaattagaa |
20065388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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