View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4045_low_9 (Length: 545)
Name: NF4045_low_9
Description: NF4045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4045_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 269 - 504
Target Start/End: Original strand, 29116037 - 29116269
Alignment:
| Q |
269 |
ttataggaagatcaaggcattataaggttattaactacttgacagataattcctaaaagaaaggaaatgtttcggttgcaatttcacacgcctcacttct |
368 |
Q |
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| T |
29116037 |
ttataggaagatcaaggcattataaggttattaactacttgacagatatttcctaaaagaaaggaaatgtttcggttgcaatttcacacgcctcact--- |
29116133 |
T |
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| Q |
369 |
aagcatgatcaaaatttgaattagtcaaatagcttactcacccctattatttatttctacaccatgtggtttaattaaataattaaatatcgaataaatc |
468 |
Q |
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| T |
29116134 |
aagcatgatcaaaatttgaattagtcaaatagcttactcacccctattatttatttctacaccatgtggtttaattaaataattaaatattgaataaatc |
29116233 |
T |
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| Q |
469 |
tttatataccgtgtataaaatattaggatgtaacaa |
504 |
Q |
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| T |
29116234 |
tttatacaacgtgtataaaatattaggatgttacaa |
29116269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 29115813 - 29116041
Alignment:
| Q |
13 |
gagatgaacgcgattctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcatcatgaagtgaaaccaagtgtataat |
112 |
Q |
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| T |
29115813 |
gagatgaacgcgattctaattgcttctataattaacgagaaaagtgagagaattttaaactggagatttaggcagcatgaagtgaaaccaagtgtatga- |
29115911 |
T |
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| Q |
113 |
taagttacggtttattaaactagaaatgatacacat---ggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaacaggat |
209 |
Q |
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| T |
29115912 |
-aagttacggtttattaaactagaaat-ataaacatgcaggatggttttgtagaattaaaattgagtaacaagttatggtttattaaaatagaacaggat |
29116009 |
T |
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| Q |
210 |
ttggaaccaaatgatctcatctaaattttata |
241 |
Q |
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| T |
29116010 |
ttggaaccaaatgatctcatctaagttttata |
29116041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 527
Target Start/End: Original strand, 29116276 - 29116306
Alignment:
| Q |
497 |
tgtaacaaatgtgattctgaacatggaatgt |
527 |
Q |
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| T |
29116276 |
tgtaacaaatgtgattctgaacatggaatgt |
29116306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 13167675 - 13167588
Alignment:
| Q |
134 |
agaaatgatacacatggatggttttgtagaattaaaattgagtaacaagtta-tggtttattaaaatagaacaggatttggaaccaaa |
220 |
Q |
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| T |
13167675 |
agaaatgatagatatggatagttttgtagaactggaatagagtagcaagttactcgtttattaaaatagaataggatggggaaccaaa |
13167588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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