View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4046_high_13 (Length: 260)

Name: NF4046_high_13
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4046_high_13
NF4046_high_13
[»] chr4 (7 HSPs)
chr4 (1-251)||(53214277-53214531)
chr4 (135-236)||(4710288-4710390)
chr4 (164-237)||(42451827-42451901)
chr4 (147-184)||(16936094-16936131)
chr4 (4-78)||(11181475-11181549)
chr4 (9-59)||(27059341-27059391)
chr4 (148-184)||(34981917-34981953)
[»] chr8 (19 HSPs)
chr8 (98-182)||(24190891-24190975)
chr8 (148-184)||(39872185-39872221)
chr8 (152-221)||(5345311-5345380)
chr8 (148-184)||(7130619-7130655)
chr8 (148-184)||(17944828-17944864)
chr8 (184-244)||(28009227-28009287)
chr8 (184-244)||(28066530-28066590)
chr8 (164-237)||(41130732-41130805)
chr8 (4-69)||(2287709-2287774)
chr8 (184-245)||(28008601-28008662)
chr8 (184-245)||(28065904-28065965)
chr8 (147-184)||(42431689-42431726)
chr8 (148-184)||(1797756-1797792)
chr8 (148-184)||(7130147-7130183)
chr8 (147-179)||(30201964-30201996)
chr8 (148-184)||(35348683-35348719)
chr8 (185-221)||(36110400-36110436)
chr8 (185-221)||(41720854-41720890)
chr8 (148-184)||(45156032-45156068)
[»] chr7 (7 HSPs)
chr7 (99-221)||(15328843-15328966)
chr7 (152-184)||(16488185-16488217)
chr7 (118-221)||(36645061-36645165)
chr7 (169-236)||(48582278-48582346)
chr7 (184-242)||(37254022-37254079)
chr7 (148-178)||(42629204-42629234)
chr7 (147-179)||(36653730-36653762)
[»] chr1 (1 HSPs)
chr1 (110-213)||(46150397-46150501)
[»] chr2 (12 HSPs)
chr2 (103-237)||(26424917-26425052)
chr2 (149-184)||(38571671-38571706)
chr2 (111-184)||(6858689-6858762)
chr2 (148-183)||(3816313-3816348)
chr2 (88-130)||(6858711-6858753)
chr2 (164-221)||(6858766-6858824)
chr2 (148-177)||(304343-304372)
chr2 (148-184)||(303424-303460)
chr2 (148-176)||(6402361-6402389)
chr2 (148-184)||(19004823-19004859)
chr2 (148-184)||(33710909-33710945)
chr2 (135-179)||(37940135-37940179)
[»] chr5 (8 HSPs)
chr5 (103-236)||(5655261-5655395)
chr5 (148-184)||(25868123-25868159)
chr5 (147-184)||(14410768-14410805)
chr5 (148-184)||(25994946-25994982)
chr5 (148-184)||(14410253-14410289)
chr5 (148-184)||(25868507-25868543)
chr5 (148-184)||(32804891-32804927)
chr5 (150-221)||(36170485-36170557)
[»] scaffold0007 (1 HSPs)
scaffold0007 (148-184)||(186963-186999)
[»] chr3 (2 HSPs)
chr3 (148-183)||(53038903-53038938)
chr3 (184-221)||(38810084-38810121)
[»] scaffold0471 (1 HSPs)
scaffold0471 (185-221)||(269-305)
[»] chr6 (1 HSPs)
chr6 (148-184)||(31778844-31778880)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 53214531 - 53214277
Alignment:
Q  1 aaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattggta--tttggtttaactcacac 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |    
T  53214531 aaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattggtatgtttggtttaactcacgc 53214432  T
Q  99 agggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgt--gacttaagtcacacatggtattttcgaaa 196  Q
    | |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||||||| |||| |||||||||||    
T  53214431 atggtttataacctacgtgagttaactcacacaggatttataaccagtatgagttaactcatgcagcgtgagacttaagtcacgcatgatattttcgaaa 53214332  T
Q  197 gtttagttgggagcgaacaatttttcatcggaggagagcatttttctaagaataa 251  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||||||||||    
T  53214331 gtttagttgggagcgagcaatttttgatgggaggagagcatttttctaagaataa 53214277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 4710390 - 4710288
Alignment:
Q  135 tttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg-gtattttcgaaagtttagttgggagcgaacaatttttcatcggaggaga 233  Q
    ||||||||| | ||||||||||||| | |  |||||||||||||| |||| |||||||| ||||||| ||||||||||| |||||||| || |||| |||    
T  4710390 tttataaccggtatgagttaactcacgtaatgtgacttaagtcacgcatgagtattttcaaaagtttggttgggagcgagcaattttttatgggagaaga 4710291  T
Q  234 gca 236  Q
    |||    
T  4710290 gca 4710288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 42451901 - 42451827
Alignment:
Q  164 gcgtgacttaagtcacacatg-gtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcat 237  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||| || |||| |||||||    
T  42451901 gcgtgacttaagtcacacatgagtattttcgaaagtttggttgggagcaagcaattttttatgggagaagagcat 42451827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 16936094 - 16936131
Alignment:
Q  147 atgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||| |||||||||||||||||||||    
T  16936094 atgagttaactcatgcggcgtgacttaagtcacacatg 16936131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 11181475 - 11181549
Alignment:
Q  4 tacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattg 78  Q
    |||||||||||| | |||||||||| |||  |||||||| |||| | || |||||||| || |||||||||||||    
T  11181475 tacaagatttttgtatggtccacatcgcactaatagtttctatgatgcatgacgcataaaaacttctataaattg 11181549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 27059341 - 27059391
Alignment:
Q  9 gatttttctgtggtccacattgcatcaatagtttatatggtccacgacgca 59  Q
    ||||||||| |||||||||||||| | | ||||||| ||||||||||||||    
T  27059341 gatttttctatggtccacattgcaccgacagtttatgtggtccacgacgca 27059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 34981917 - 34981953
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||| |||||||||| |||||||||||||||||||||    
T  34981917 tgagataactcatgcggcgtgacttaagtcacacatg 34981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 24190891 - 24190975
Alignment:
Q  98 cagggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca 182  Q
    ||||||||||||||||| | |||||||||||  | |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  24190891 cagggtttataacctacatgagttaactcacgtatgatttataaccagcgtgagttaactcacgcagcgtgacttaagtcacaca 24190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 39872185 - 39872221
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||||||||||||||||||||    
T  39872185 tgagttaactcatgcagcgtgacttaagtcacacatg 39872221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 5345380 - 5345311
Alignment:
Q  152 ttaactcatgcagcgtgacttaagtcacacatggtattttcgaaagtttagttgggagcgaacaattttt 221  Q
    |||||| | ||||||||||||||||||  |||||| |||||| ||||||  |||||||||| ||||||||    
T  5345380 ttaacttacgcagcgtgacttaagtcatgcatggtgttttcggaagtttgattgggagcgagcaattttt 5345311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 7130619 - 7130655
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7130619 tgagttaactcatgcagcgtgacttaagtcacgcatg 7130655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 17944828 - 17944864
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17944828 tgagttaactcatgcagcgttacttaagtcacacatg 17944864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 28009227 - 28009287
Alignment:
Q  184 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttcta 244  Q
    |||||||| |||||||| ||||||||||| |||||||| || |||| ||||||||| ||||    
T  28009227 ggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcatttctcta 28009287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 28066530 - 28066590
Alignment:
Q  184 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttcta 244  Q
    |||||||| |||||||| ||||||||||| |||||||| || |||| ||||||||| ||||    
T  28066530 ggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcatttctcta 28066590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 41130732 - 41130805
Alignment:
Q  164 gcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcat 237  Q
    ||||||||||||| || ||||| |||||||| |||||| ||||||| |||||||||||| || |||| |||||||    
T  41130732 gcgtgacttaagttacgcatgggtattttcggaagttt-gttgggaacgaacaattttttatgggagaagagcat 41130805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 2287774 - 2287709
Alignment:
Q  4 tacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttc 69  Q
    |||| ||||||||||||||||||||| || | | | |||||||||||||||| ||| |||| ||||    
T  2287774 tacatgatttttctgtggtccacattacaccgacaatttatatggtccacgaggcaaagaaacttc 2287709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 28008662 - 28008601
Alignment:
Q  184 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttctaa 245  Q
    ||||||||  ||||||| ||||||| ||| |||||||| || |||| |||||||||||||||    
T  28008662 ggtatttttaaaagttttgttgggatcgagcaattttttatgggagaagagcatttttctaa 28008601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 28065965 - 28065904
Alignment:
Q  184 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttctaa 245  Q
    ||||||||  ||||||| ||||||| ||| |||||||| || |||| |||||||||||||||    
T  28065965 ggtatttttaaaagttttgttgggatcgagcaattttttatgggagaagagcatttttctaa 28065904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 42431726 - 42431689
Alignment:
Q  147 atgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  42431726 atgagttaactcatgcagcatgacttaagtcacgcatg 42431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 1797792 - 1797756
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||| | ||||||||||||||||||||||||    
T  1797792 tgagttaacttacgcagcgtgacttaagtcacacatg 1797756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 7130183 - 7130147
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  7130183 tgagttaactcacgcagcgtgacttaagtcacgcatg 7130147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 30201964 - 30201996
Alignment:
Q  147 atgagttaactcatgcagcgtgacttaagtcac 179  Q
    ||||||||||||||||||| |||||||||||||    
T  30201964 atgagttaactcatgcagcatgacttaagtcac 30201996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 35348719 - 35348683
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  35348719 tgagttaattcatgcagcgtgacttaagtcacgcatg 35348683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 36110400 - 36110436
Alignment:
Q  185 gtattttcgaaagtttagttgggagcgaacaattttt 221  Q
    ||||||||||||||||  |||||||||||||||||||    
T  36110400 gtattttcgaaagtttgattgggagcgaacaattttt 36110436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 41720890 - 41720854
Alignment:
Q  185 gtattttcgaaagtttagttgggagcgaacaattttt 221  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  41720890 gtattttcaaaagtttagttaggagcgaacaattttt 41720854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 45156068 - 45156032
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  45156068 tgagttaactcatgcagcgtgatttaagtcacgcatg 45156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 15328966 - 15328843
Alignment:
Q  99 agggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg-gtattttcgaaag 197  Q
    |||||||||||||||| | ||||||||||  || ||||||||||||| |||| |||| |||| |||||| ||||||||||  || |  |||||||||| |    
T  15328966 agggtttataacctacatgagttaactcaagcaggatttataaccagcatgaattaattcatacagcgtaacttaagtcatgcaagaatattttcgaatg 15328867  T
Q  198 tttagttgggagcgaacaattttt 221  Q
    ||| |||||||| |||||||||||    
T  15328866 tttggttgggagtgaacaattttt 15328843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 16488185 - 16488217
Alignment:
Q  152 ttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||||||||||||||||    
T  16488185 ttaactcatgcagcgtgacttaagtcacacatg 16488217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 36645165 - 36645061
Alignment:
Q  118 agttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaa 216  Q
    ||||||||||| |||||||||||| | |  ||||||||||||  || | |||| ||| |||| || || |||||||| |||||| ||||||||||| |||    
T  36645165 agttaactcacgcaagatttataatcggcgtgagttaactcacacaacatgacataaatcacgcaggggtattttcggaagtttcgttgggagcgagcaa 36645066  T
Q  217 ttttt 221  Q
    |||||    
T  36645065 ttttt 36645061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 48582278 - 48582346
Alignment:
Q  169 acttaagtcacacat-ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagca 236  Q
    ||||||||||||||  ||||||||||||||||| ||||||||| | |||||||| || |||| ||||||    
T  48582278 acttaagtcacacaaaggtattttcgaaagtttggttgggagcaagcaatttttgatgggagaagagca 48582346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 37254022 - 37254079
Alignment:
Q  184 ggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggagagcatttttc 242  Q
    ||||||||| ||||||||||||||| ||| |||||||| || |||| ||||||||||||    
T  37254022 ggtattttcaaaagtttagttgggatcgagcaattttt-atgggagaagagcatttttc 37254079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 42629204 - 42629234
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtca 178  Q
    |||||||||||||||||||||||||||||||    
T  42629204 tgagttaactcatgcagcgtgacttaagtca 42629234  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 36653730 - 36653762
Alignment:
Q  147 atgagttaactcatgcagcgtgacttaagtcac 179  Q
    |||||||||||| ||||||||||||||||||||    
T  36653730 atgagttaactcttgcagcgtgacttaagtcac 36653762  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 46150397 - 46150501
Alignment:
Q  110 cctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca-tggtattttcgaaagtttagttggga 208  Q
    ||||||| |||||| |||| |||||||||||||  |  |||||||||||| |||||||||||||||| || || |||||||||  ||||||| |||||||    
T  46150397 cctacgtgagttaattcacgcaagatttataacatgcgtgagttaactcacgcagcgtgacttaagtgacgcattggtatttttaaaagtttggttggga 46150496  T
Q  209 gcgaa 213  Q
    |||||    
T  46150497 gcgaa 46150501  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 26425052 - 26424917
Alignment:
Q  103 tttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca-tggtattttcgaaagttta 201  Q
    |||||||||||||| ||||||||||  |||| ||||||||| |   ||||||||||| || ||||||||||| |||| ||  |||||||||||||||||     
T  26425052 tttataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcacgcggcgtgacttaaatcacgcaggggtattttcgaaagtttg 26424953  T
Q  202 gttgggagcgaacaatttttcatcggaggagagcat 237  Q
     || | ||||| |||||||| || |||| |||||||    
T  26424952 attagaagcgaccaatttttgataggagaagagcat 26424917  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 38571706 - 38571671
Alignment:
Q  149 gagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    ||||||||||||||||||||||||||||||||||||    
T  38571706 gagttaactcatgcagcgtgacttaagtcacacatg 38571671  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 6858762 - 6858689
Alignment:
Q  111 ctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||| ||||||||||| |||| |||||||||    ||||||||||||  | |||||||||||||||||||||    
T  6858762 ctacgtgagttaactcacgcaaggtttataacctacgtgagttaactcacactgcgtgacttaagtcacacatg 6858689  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 3816313 - 3816348
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacat 183  Q
    |||||||||||| |||||||||||||||||||||||    
T  3816313 tgagttaactcacgcagcgtgacttaagtcacacat 3816348  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 6858753 - 6858711
Alignment:
Q  88 ttaactcacacagggtttataacctacgtaagttaactcacac 130  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  6858753 ttaactcacgcaaggtttataacctacgtgagttaactcacac 6858711  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 6858766 - 6858824
Alignment:
Q  164 gcgtgacttaagtcacaca-tggtattttcgaaagtttagttgggagcgaacaattttt 221  Q
    |||||||||||||||| || |||||| ||||||||||| |||| ||||| |||||||||    
T  6858766 gcgtgacttaagtcacgcagtggtatattcgaaagtttggttgagagcggacaattttt 6858824  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 304343 - 304372
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtc 177  Q
    ||||||||||||||||||||||||||||||    
T  304343 tgagttaactcatgcagcgtgacttaagtc 304372  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 303460 - 303424
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||| |||||| |||||||||||||||||||||    
T  303460 tgagttaattcatgcggcgtgacttaagtcacacatg 303424  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 6402361 - 6402389
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagt 176  Q
    |||||||||||||||||||||||||||||    
T  6402361 tgagttaactcatgcagcgtgacttaagt 6402389  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 19004859 - 19004823
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  19004859 tgagttaactcatgcggcgtgacttaagtcacgcatg 19004823  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 33710945 - 33710909
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  33710945 tgagttaactcacgcagcgtgacttaagtcacgcatg 33710909  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 37940135 - 37940179
Alignment:
Q  135 tttataaccagaatgagttaactcatgcagcgtgacttaagtcac 179  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||    
T  37940135 tttataacctgcgtgagttaactcatgtagcgtgacttaagtcac 37940179  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 5655395 - 5655261
Alignment:
Q  103 tttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagttta 201  Q
    |||||||||||| | ||||||||| | ||  ||||||||||    |||||||||||   ||||||||||||||||||||| |  |||||||| ||||||     
T  5655395 tttataacctacatgagttaactcgcgcagaatttataacctatgtgagttaactcgcacagcgtgacttaagtcacacaggaatattttcggaagtttg 5655296  T
Q  202 gttgggagcgaacaatttttcatcggaggagagca 236  Q
    ||||| |||||||||||||| || |||| ||||||    
T  5655295 gttggaagcgaacaattttttatgggagaagagca 5655261  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 25868159 - 25868123
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||||||||||||||||||||    
T  25868159 tgagttaactcatgcagcgtgacttaagtcacacatg 25868123  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 14410768 - 14410805
Alignment:
Q  147 atgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14410768 atgagttaactcacgcagcgtgacttaagtcacacatg 14410805  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 25994946 - 25994982
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25994946 tgagttaactcatgcagcgtgacttaagtcacgcatg 25994982  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 14410289 - 14410253
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  14410289 tgagttaactcacgcagcgtgacttaagtcacgcatg 14410253  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 25868507 - 25868543
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  25868507 tgagttaacttatgcagcgtgacttaagtcacgcatg 25868543  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 32804891 - 32804927
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||| || |||||||||||||||||||||    
T  32804891 tgagttaactcacgcggcgtgacttaagtcacacatg 32804927  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 36170485 - 36170557
Alignment:
Q  150 agttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaattttt 221  Q
    |||||||||| ||||| ||| |||| |||| || || ||||||||||||||||||||| |||||  |||||||    
T  36170485 agttaactcaagcagcttgagttaactcacgcaggggtattttcgaaagtttagttggtagcgagtaattttt 36170557  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 186999 - 186963
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    |||||||||||||||| ||||||||||||||||||||    
T  186999 tgagttaactcatgcaacgtgacttaagtcacacatg 186963  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 53038938 - 53038903
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacat 183  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53038938 tgagttaactcatgcggcgtgacttaagtcacacat 53038903  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 38810121 - 38810084
Alignment:
Q  184 ggtattttcgaaagtttagttgggagcgaacaattttt 221  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  38810121 ggtattttcgaaagttaggttgggagcgaacaattttt 38810084  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 269 - 305
Alignment:
Q  185 gtattttcgaaagtttagttgggagcgaacaattttt 221  Q
    ||||||||||||||||  |||||||||||||||||||    
T  269 gtattttcgaaagtttgattgggagcgaacaattttt 305  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 31778880 - 31778844
Alignment:
Q  148 tgagttaactcatgcagcgtgacttaagtcacacatg 184  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  31778880 tgagttaactcatgcggcgtgacttaagtcacgcatg 31778844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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