View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4046_high_22 (Length: 203)
Name: NF4046_high_22
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 109641 - 109527
Alignment:
| Q |
40 |
aactttctaagctagtgcttattccttaaacatttaatacatttccaggaaaaccattataaatacaaggtgtatatatgatttcattatcgacacacaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
109641 |
aactttctaagctagtgcttattccttaaacatttaatacatttacagtaataccattataaatacaagggg----tgtgatttcattatcgacacacaa |
109546 |
T |
|
| Q |
140 |
atttacatattttacagca |
158 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
109545 |
atttacatattttgcagca |
109527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 28767525 - 28767453
Alignment:
| Q |
40 |
aactttctaagctagtgcttattccttaaacatttaatacatttccaggaaaaccattataaatacaaggtgt |
112 |
Q |
| |
|
||||| ||| ||||||||||| || |||| |||| ||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
28767525 |
aacttcctaggctagtgcttactcattaagcattcaatacatttattgtaaaaccattataaatacagggtgt |
28767453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 23221036 - 23221108
Alignment:
| Q |
40 |
aactttctaagctagtgcttattccttaaacatttaatacatttccaggaaaaccattataaatacaaggtgt |
112 |
Q |
| |
|
||||| ||| ||||||||||| | |||| |||| ||| || || | |||||||||||||||||||||||||| |
|
|
| T |
23221036 |
aacttcctatgctagtgcttactaattaagcattcaatgcacttacgggaaaaccattataaatacaaggtgt |
23221108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University