View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4046_high_3 (Length: 515)

Name: NF4046_high_3
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4046_high_3
NF4046_high_3
[»] chr4 (2 HSPs)
chr4 (240-499)||(40614091-40614349)
chr4 (164-230)||(17558824-17558890)
[»] chr1 (3 HSPs)
chr1 (164-229)||(38236310-38236375)
chr1 (164-231)||(6923503-6923570)
chr1 (181-229)||(51387129-51387177)
[»] chr8 (1 HSPs)
chr8 (177-232)||(16367864-16367919)
[»] chr5 (3 HSPs)
chr5 (177-232)||(16349712-16349767)
chr5 (164-229)||(16222680-16222745)
chr5 (177-229)||(4082576-4082628)
[»] chr7 (1 HSPs)
chr7 (192-229)||(7853691-7853728)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 240 - 499
Target Start/End: Complemental strand, 40614349 - 40614091
Alignment:
Q  240 tataataaagctcaactgtacgaggttagcttagtcttgtcttaaacaaagtaaagaagacaaggaccaaaccaaatcataagaaaatttaggttgtaca 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  40614349 tataataaagctcaactgtacgaggttagcttagtcttgtcttaaacaaagtaaagaagacaaggaccaaaccaaatcatcagaaaatttaggt-gtaca 40614251  T
Q  340 tagcaaccatttctctgtttttcacaacactaacaaaatttctgtccnnnnnnncatctccactttgtttctttctcccaaccctgttccattaatttct 439  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||    
T  40614250 tagcaaccatttctctgtttttcacaacactcacaaaatttctgtcctttttttcatttccactttgtttctttctcccaaccctgttccattaatttct 40614151  T
Q  440 acaactattagtacatagccactccaaactcttcttccttcttccatcatatcaatattc 499  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40614150 acaactatttgtacatagccactccaaactcttcttccttcttccaccatatcaatattc 40614091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 17558890 - 17558824
Alignment:
Q  164 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagtt 230  Q
    |||||||||||  | || ||||| || ||||||||||||||||   |||||||||||||||||||||    
T  17558890 aatgaatttcatattatctttttggctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 38236375 - 38236310
Alignment:
Q  164 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 229  Q
    |||||| ||||  ||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  38236375 aatgaagttcaactaatgtttttagctatatatgacccgtgctgccgcacgggtagacgatctagt 38236310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 6923503 - 6923570
Alignment:
Q  164 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagttt 231  Q
    |||||| ||||  |||| |||||||| |||||||||||||||    ||||||||||||||||||||||    
T  6923503 aatgaagttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttt 6923570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 51387177 - 51387129
Alignment:
Q  181 gtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 229  Q
    ||||||| | ||||||||||||||||   ||||||||||||||||||||    
T  51387177 gtttttaactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 16367864 - 16367919
Alignment:
Q  177 taatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagtttc 232  Q
    ||||||||| | | ||||||||||||||||   |||||||||||||||||||||||    
T  16367864 taatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagtttc 16367919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 16349767 - 16349712
Alignment:
Q  177 taatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagtttc 232  Q
    ||||||||||| | ||||||||||||||||   |||||||| ||||||||||||||    
T  16349767 taatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagtttc 16349712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 16222680 - 16222745
Alignment:
Q  164 aatgaatttcagttaatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 229  Q
    |||||| ||||  ||||||||||||| |||||||||  |||||   ||||||||||||||||||||    
T  16222680 aatgaagttcaactaatgtttttagctatatatgacatgtgcggcagcacgggtagacgatctagt 16222745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 4082576 - 4082628
Alignment:
Q  177 taatgtttttagccatatatgacccgtgcgttcgcacgggtagacgatctagt 229  Q
    ||||||||||| | ||||||||||||||||   |||||||| |||||||||||    
T  4082576 taatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 7853691 - 7853728
Alignment:
Q  192 tatatgacccgtgcgttcgcacgggtagacgatctagt 229  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  7853691 tatatgacccgtgcggtagcacgggtagacgatctagt 7853728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University