View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_high_5 (Length: 436)
Name: NF4046_high_5
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 88 - 424
Target Start/End: Complemental strand, 13675486 - 13675150
Alignment:
| Q |
88 |
tccaaactctcacaaaccgatcttcatccaattttttcaaagtcattgatgtgaattgatgattgatagttaactccctttgatgaatttannnnnnnat |
187 |
Q |
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| T |
13675486 |
tccaaactctcacaaaccgatcttcatccaatttcttcaaagtcattgatgtaaattgatgattgatagttaactatctttgatgaatttatttttttat |
13675387 |
T |
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| Q |
188 |
ttgattgcatttagttttggttaaatgtcattgttacctagacaattttcgaatgaatgactttatttctggtaatttgtgtttgatattatgactgaat |
287 |
Q |
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| T |
13675386 |
ttgattgcatttagttttggttaaatgtcattgttacctagacaattttcgaatgaatgactttatttctggtaatttgtgtttgatattatgactgaat |
13675287 |
T |
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| Q |
288 |
gattgaatgcatgagcgactgattgaatttatgtataaacgtttgaatgtatgaagtaatgggnnnnnnncataaaaacagagcttccgtcacactgtgc |
387 |
Q |
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| T |
13675286 |
gattgaatgcatgaacgactgattgaatttatgtataaacgtttgaatgtatgaagtaatgggaaaaaaacataaaaacagagcttccgtcacactgtgc |
13675187 |
T |
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| Q |
388 |
atttgcctatgtaactgacagtcaattgttgtttatg |
424 |
Q |
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| T |
13675186 |
atttgcctatgtaactgacagtcaattgttgtttatg |
13675150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 13675584 - 13675536
Alignment:
| Q |
11 |
caaaggcagagagcgacaagtacctctcattgcgttcgagttatattcc |
59 |
Q |
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| T |
13675584 |
caaaggcagcgagcgacaagtacctctcattgcgttcgagttatattcc |
13675536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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