View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_high_9 (Length: 336)
Name: NF4046_high_9
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_high_9 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 45117422 - 45117104
Alignment:
| Q |
19 |
acactattatgatgagataataattttctgtat---tatattaataatgtaatatgagtttttagcaatttttgggtgaagttattcaaatttgattcca |
115 |
Q |
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| T |
45117422 |
acactattatggtgagataataattttctgtatcattatattaataatgtaatatgagtttttagcaatttttgggtgaagatattcaaatttgattcca |
45117323 |
T |
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| Q |
116 |
gaaagtattaatgtattatcactttttgttaatcttttttagataaatttaattgcacccatcattatagtagcattattgtgatgaaacgaagtag-aa |
214 |
Q |
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| T |
45117322 |
taaagtattaatgtattatcactttttgttaatcttttttagataaatttaattgcacccatcatta---tagcattattgtgatgaaacgaggtagaaa |
45117226 |
T |
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| Q |
215 |
aaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaa |
314 |
Q |
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| T |
45117225 |
aaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaa |
45117126 |
T |
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| Q |
315 |
tgtaagaggcttatcactctct |
336 |
Q |
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| T |
45117125 |
tgtaagaggctcatcactctct |
45117104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 26721488 - 26721805
Alignment:
| Q |
19 |
acactattatgatgagataataattttctgtat---tatattaataatgtaatatgagtttttagcaatttttgggtgaagttattcaaatttgattcca |
115 |
Q |
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| T |
26721488 |
acactattatgatgagataataattttctgtatcattatattaataatgtaatatgaatttttagcaatttttgggtgaacatattcaaatttgattcca |
26721587 |
T |
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| Q |
116 |
gaaagtattaatgtattatcactttttgttaatcttttttagataaatttaattgcacccatcattatagtagcattattgtgatgaaacgaagtagaaa |
215 |
Q |
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| T |
26721588 |
taaagtattaatgtattatcaatttttgttaatcttttttagataaatttaattgcacccatcattatag---cattattgtgatgaaacgaagtagaaa |
26721684 |
T |
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| Q |
216 |
aaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaat |
315 |
Q |
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||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
26721685 |
aaatgaaccaaaaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaatggtgttgtcgctgctatcctttcaaggaat |
26721784 |
T |
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| Q |
316 |
gtaagaggcttatcactctct |
336 |
Q |
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|| |||||||||||||||||| |
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| T |
26721785 |
gttagaggcttatcactctct |
26721805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 52 - 336
Target Start/End: Original strand, 2986991 - 2987273
Alignment:
| Q |
52 |
tatattaataatgtaatatgagtttttagcaatttttgggtgaagttattcaaatttgattccagaaagtattaatgtattatcactttttgttaatctt |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2986991 |
tatattaataatgtaatatgagtttttagcaatttttgggtgaagatattcaaatttgattccataaagtattaatgtattatcactttttgttaatctt |
2987090 |
T |
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| Q |
152 |
ttttagataaatttaattgcacccatcattatagtagcattattgtgatgaaacgaagtag-aaaaaatgaaccaagagaagaggatttcagttagattc |
250 |
Q |
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| T |
2987091 |
ttttagataaatttaattgcacccatcatta---tagcattattgtgatgaaacgaagtagaaaaaaatgaaccaagaggagaggatttcagttagattc |
2987187 |
T |
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| Q |
251 |
acgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctct |
336 |
Q |
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| T |
2987188 |
acgacgacagaggatttcgtagacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggcttatcactctct |
2987273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 2986641 - 2986673
Alignment:
| Q |
19 |
acactattatgatgagataataattttctgtat |
51 |
Q |
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| T |
2986641 |
acactattatggtgagataataattttctgtat |
2986673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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