View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4046_low_1 (Length: 573)
Name: NF4046_low_1
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_1 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0011 (3 HSPs) |
| | |
|
| [»] scaffold0607 (1 HSPs) |
| | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 32283608 - 32284159
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| || |
|
|
| T |
32283608 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaagaattacgaaaaactctccatagaaaattcttgacct |
32283707 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
32283708 |
ttgggggcaattttaaactccaaatacaattctagttacccggcacatggtgttgtacaactgccacatcattattcagaatatccttgtaagcactttt |
32283807 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| |||||||||||||| || ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
32283808 |
aactgaataggcaccatccctctcaaaattccaaacaggcacatcatgagttaccgaagggaatagtggagtattaaaaatatttctagcagtagcattg |
32283907 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| ||||||||| |||| ||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32283908 |
tcaaaaaaaacattaattatctccatattccattatttttggtgtgtaaccaacaaatcagaaacagtaatagatggacactccaaatgatgatgagtat |
32284007 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
|| |||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
32284008 |
acggtaaaattcgtgttgcattactgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccactgaaaaccacgtcgaatcacgtc |
32284107 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32284108 |
tttggcagtccatatgctacgccaaacataactaggattatggcctatgcta |
32284159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 32577333 - 32576783
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||| | ||||| |||||||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
32577333 |
cacactgcacacctgtcaatacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaactt |
32577234 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||||||||| ||||| || | |||||||||| ||| || |||||||| |||| || | |||||||||||||||||| || ||||||||||| |
|
|
| T |
32577233 |
tcgggggcaattttaatctccagatatagttccagttactcggtactcggtgttgaacaattgtcatatcatgattcagaatatctttataagcactttt |
32577134 |
T |
|
| Q |
217 |
aacggaatgc--accatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||| || || ||||||| ||||| |||||||||||| ||||| | |||||||| | |||||||||||| ||| || | |
|
|
| T |
32577133 |
aactgaataattaccatccctttcaaatttccaaacaggcatatcatgagttaccgaaggaagcaacggagtgt-aaaaatatttctggcaatactagag |
32577035 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| |||||| ||||| | |||||||| ||||||||||||||||||||| || || |||||||| ||||||||||| | |
|
|
| T |
32577034 |
tcaaagaaagtattaatgagctccacattccactgtttctcgggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttg |
32576935 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | || |||||||||||||| || ||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
32576934 |
aaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatc |
32576835 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32576834 |
tttagcactccaaatactacgccaaacataactaggattatggccaatgcta |
32576783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 566
Target Start/End: Original strand, 23770621 - 23771170
Alignment:
| Q |
20 |
actgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttcg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
23770621 |
actgcacacctatcagtacattgaactccttttgattgcaatcagattcttatgggcaaataattacgataagctctccataggaaattcttgaccttcg |
23770720 |
T |
|
| Q |
120 |
ggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcacttttaac |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
23770721 |
ggggcaattttaaactccaaatacaattccagttacccggcacacgatgatgtacaactgcctcatcgtgatttagaatatccttgtaagcacttttaac |
23770820 |
T |
|
| Q |
220 |
ggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcattatc- |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| || |
|
|
| T |
23770821 |
tgaataggcaccatccctctcgaacttccaaacaggcacatcatgagttaccgaagggaataacggagtattaaaaatatttctagctatagtattgtca |
23770920 |
T |
|
| Q |
317 |
nnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtagac |
416 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| |||| |
|
|
| T |
23770921 |
aaaaaaagcattaatgagctcaatattccattgtttttggggtgtaactaacaagtcagaaaccgtgatagatggccatcccaaatgatgatgagaagac |
23771020 |
T |
|
| Q |
417 |
agtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtctt |
516 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23771021 |
ggtaaaattcgtgcagcattactgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccattgaaaaccacgacgaatcacatctt |
23771120 |
T |
|
| Q |
517 |
tgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23771121 |
tggcactccatatgctacgccaaacataactagaattatggcctatgcta |
23771170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 540
Target Start/End: Complemental strand, 10213115 - 10212586
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||||||||||||| | ||| ||||| | || |
|
|
| T |
10213115 |
cacaccgcacacctatcagtacactgaactccttttacttgcaagcagattctcgtaggcaaacaattacgacaagctctccacaaaaagttcttaacct |
10213016 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
10213015 |
tcgggggcaactttaagctccaaacacaattccaattacccgacacacggtgttgtacaactgacacatcatgattcagaatatccttataagcactttt |
10212916 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatt- |
313 |
Q |
| |
|
||| |||| ||||||||| |||||||||||||| |||||||||||||||| | ||||||| ||| | || ||||||||||||||| |||| ||| |
|
|
| T |
10212915 |
aactgaataagcaccatccttctcgaacttccaagtaggcacatcatgagtcattgaagggagcaacagggtgttaaaaatatttcta--agtagaattg |
10212818 |
T |
|
| Q |
314 |
-----atcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgat |
408 |
Q |
| |
|
| ||||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
10212817 |
taaaaaaaaaaaaaagcattaactagatccatattccattgtttttaagatgtaaccaacaagtcagaaacaatgatatgcggccattccaaatgatgat |
10212718 |
T |
|
| Q |
409 |
gagtagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaat |
508 |
Q |
| |
|
||||| || ||| |||||||||||||||| ||||| |||| |||| ||||||||| |||||||| | | | ||||||||||| ||||||||| ||||||| |
|
|
| T |
10212717 |
gagtacacggtacaattcgtgcagcattactgagccatggatgattccaaactggtatatgttcacctatacctatactccactgaaaaccatgacgaat |
10212618 |
T |
|
| Q |
509 |
cacgtctttgacactccatatgctacgccaaa |
540 |
Q |
| |
|
||| ||||| |||||||| || |||||||||| |
|
|
| T |
10212617 |
cacatctttcacactccaaatactacgccaaa |
10212586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 23797556 - 23797701
Alignment:
| Q |
20 |
actgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttcg |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||| |
|
|
| T |
23797556 |
actgcacagctatcagtacactgaactccttttgattgcaatcggattcttgtgggcaaacaattatgacaagctcttcataggaaattcttgaccttcg |
23797655 |
T |
|
| Q |
120 |
ggggcaattttaaactccaaattcaattccagttacccggcacacg |
165 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
23797656 |
ggggaaattttaaactccaaatacaattcaagttacccggcacacg |
23797701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 38452536 - 38452652
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38452536 |
cacactgcacacctatcagtacactgaactccttttgattgcaattgaattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgacct |
38452635 |
T |
|
| Q |
117 |
tcgggggcaattttaaa |
133 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
38452636 |
tcggtggcaattttaaa |
38452652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 27176717 - 27176642
Alignment:
| Q |
325 |
cattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaa |
400 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||||| |||||| | || ||||||| |||| || ||||| |
|
|
| T |
27176717 |
cattaattagctccatattccattgattttgatgtgtaaccatcaagtctgcaatagtgatatatggccattccaa |
27176642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 40075325 - 40075380
Alignment:
| Q |
504 |
cgaatcacgtctttgacactccatatgctacgccaaacataactaggattatggcc |
559 |
Q |
| |
|
||||| || ||||| ||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
40075325 |
cgaattacatctttcacattccaaatactacgccaaacataactaggattatggcc |
40075380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 562
Target Start/End: Complemental strand, 10212062 - 10212033
Alignment:
| Q |
533 |
acgccaaacataactaggattatggcctat |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10212062 |
acgccaaacataactaggattatggcctat |
10212033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 553
Target Start/End: Original strand, 41688491 - 41688520
Alignment:
| Q |
524 |
ccatatgctacgccaaacataactaggatt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41688491 |
ccatatgctacgccaaacataactaggatt |
41688520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 51192715 - 51193266
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
51192715 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcggattcttgtgggcaaacacgtacgacaagctctccatagaaaattcttgacct |
51192814 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51192815 |
ttgggggcaattttaaactccaaatacaattccagttacccggcacacggtgttgtacaactgccacatcatgattcagaatatccttgtaagcactttt |
51192914 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || | |
|
|
| T |
51192915 |
aactgaataggcaccatccctctcgaaattccaaacaggcacatcatgagttaccgaagggaatagtggagtattaaaaatatttctagcagtagcactg |
51193014 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| ||||||||||||| | |||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
51193015 |
tcaaaaaaaacattaattagctccatattccattgtttttggtgtgtaaccaacaaattagaaacggtaatagatggccactccaaatgatgatgagtag |
51193114 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
|| |||||||||||| ||||| ||||| ||||||| |||||||||| ||| ||||||| | ||||||| ||||| ||||||||||| |||||||| | |
|
|
| T |
51193115 |
acggtaaaattcgtgttgcattcctgagccatgggtgctcccaaactgaaatgtgttctcctatgcctatgctccactgaaaaccacggcgaatcacata |
51193214 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51193215 |
tttggcactccatatgctacgccaaacataactaggattatggcctatgcta |
51193266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 43019198 - 43019749
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
43019198 |
cacactgcacacctaccagtacactaaactccttttgattgcaatctaattcttgtgggcaaacaattacgacaagctctccatatgaaattcttgacct |
43019297 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| | |||||| |
|
|
| T |
43019298 |
tcgggggcaattttaagctccaaatacaatttcagttacccggcacacgtggttgtacaactaccacatcatgattcaaaatatccttgtaggtactttt |
43019397 |
T |
|
| Q |
217 |
aacggaatg--caccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| |||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
43019398 |
aactgaatagacaccatccttctcgaacttccaaacagacacatcatgagttaccaaagggaataacggagtattaaaaatattcttagcagtagcattg |
43019497 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
43019498 |
tcaaaaagagcattaattaactccatattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatgaggag |
43019597 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
|| |||||||||||||||||||| | ||| |||||||||||||||||| ||| ||||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43019598 |
actgtaaaattcgtgcagcattactaagccatgggtgatcccaaactgaaatgtgttcccctgtgcctatactccactgaaaaccacgacgaatcacgtc |
43019697 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019698 |
tttggcactccatatgctacgccaaacataactaggattatggcctatgcta |
43019749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 8457621 - 8457433
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||| || |
|
|
| T |
8457621 |
cacactgcacacctatcagtacactgaactccttttgattgcaaacagattcttgtgggcaaacaattacgacaaactttccataggaaattcttgacct |
8457522 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttg |
205 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| |||||| ||| |||||||| ||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
8457521 |
ttgggggcaattttaaactccaaatacaatttcagttatccgacacacggtattgtacaactgccaaatcatgatttagaatattcttg |
8457433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 13441473 - 13440975
Alignment:
| Q |
13 |
tcatcacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttg |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || || | |||||| |||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
13441473 |
tcatcacactgtacacctatcagtacactgaactccttttgcttctaagcggattctcttgggcaaacaattacgacaagctctccacatgaagttctta |
13441374 |
T |
|
| Q |
113 |
atcttcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcac |
212 |
Q |
| |
|
| |||||| ||||||||||| ||| ||| |||||||| |||||| ||||| | |||||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
13441373 |
accttcggaggcaattttaagctctaaacacaattccaattacccagcacaagatgttgtacaactgcaacatcatgattcacaatatctagataagcac |
13441274 |
T |
|
| Q |
213 |
ttttaacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatc |
310 |
Q |
| |
|
|||||| ||| | ||||||| |||||||||||||| ||||||||||| ||| || |||||| | || || | |||||| ||||||| |||| | |
|
|
| T |
13441273 |
atttaactaaataagaaccatccttctcgaacttccaagcaggcacatcataagtcaccgaaggg----agggggtgtgaaaaatgtttctaggagtagc |
13441178 |
T |
|
| Q |
311 |
attatc--nnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgat |
408 |
Q |
| |
|
||| || ||||||| |||||| ||||||| ||||||| | |||| |||| |||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
13441177 |
attgtcaaaaaaaaagcattaagtagctctatattccaatgttttttagatgtagccaaaaagtcaaaaacagtgatatgtggccactccaaatgatgat |
13441078 |
T |
|
| Q |
409 |
gagtagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaat |
508 |
Q |
| |
|
|||||||||| | |||||||||| ||||| ||||| |||| |||| ||||||||| |||||||| ||||||| ||||||| ||||| |||| |||| |
|
|
| T |
13441077 |
gagtagacaggacaattcgtgcaacattactgagccatggatgattccaaactggtatatgttcaactgtgcctttactccacataaaactacgatgaat |
13440978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 383 - 566
Target Start/End: Complemental strand, 21688741 - 21688558
Alignment:
| Q |
383 |
gatagatggacactccaaatgatgatgagtagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcct |
482 |
Q |
| |
|
||||| ||| |||||||| || ||||||||| || ||| || || ||||||||| |||| |||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
21688741 |
gatagctggccactccaagtgttgatgagtatacggtataagtctggcagcattactgagtcatgggtgatcccaaactggaatgtgttctcctgtgcca |
21688642 |
T |
|
| Q |
483 |
atactccattgaaaaccacgacgaatcacgtctttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||| |||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21688641 |
atactccactgaaaaccacggcgaatcacatctttggcactccatatactatgccatacataactaggattatggcctatgcta |
21688558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 115 - 313
Target Start/End: Complemental strand, 21688977 - 21688777
Alignment:
| Q |
115 |
cttcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactt |
214 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| ||| | |||||||||| |||||||||||| |||||||||||||||||| || | ||||||| |
|
|
| T |
21688977 |
cttcgggggcagttttaaactccaaaaacaattccaattatctggcacacggtattgtacaactgctacatcatgattcagaatatctttatgagcactt |
21688878 |
T |
|
| Q |
215 |
ttaacgga--atgcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcat |
312 |
Q |
| |
|
||||| | ||||| |||||| |||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||| |||||| |||||||| ||| |
|
|
| T |
21688877 |
ttaactaaatatgcatcatcccactcgaacttccaaacaggcatatcatgagttacataagggaataacagagtattaatgatatttttagcagtagcat |
21688778 |
T |
|
| Q |
313 |
t |
313 |
Q |
| |
|
| |
|
|
| T |
21688777 |
t |
21688777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21689036 - 21688984
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattct |
69 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
21689036 |
cacattgcacacctatcagtacattgaactccttttgattgtaatcggattct |
21688984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 9360039 - 9359485
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| || |
|
|
| T |
9360039 |
cacattgcacacctatcagtacactgaactccttttgattgcaatcggattcttgtgggcagacaattacgacaagctctccataggaaattcttgacct |
9359940 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
9359939 |
tcgggggcaattttaaactccaaatacaattccagttaccttccacacggtgatgtacaactgtcacatcatgattcagaatatccttgtaagcactttt |
9359840 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| |||||||||||||||||| |||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
9359839 |
aactgaataggcaccatccctctcgaacatccaaacaggcacatcatgagctaccgaagggaataacggggtattaaaaatatttctagcagttgcattg |
9359740 |
T |
|
| Q |
315 |
tc---nnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgag |
411 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
9359739 |
tcaaaaaaaaataatttaattagctccatattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatggg |
9359640 |
T |
|
| Q |
412 |
tagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcac |
511 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
9359639 |
tagacggtaaaattcgtgcagcattactgagtcatgggtgatcccaaactggaatgtgatcttttgtgcctatactccactgaaaaccacggcgaatcac |
9359540 |
T |
|
| Q |
512 |
gtctttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9359539 |
gtctttggcactccatatgctacgccaaacataacaaggattatggcctatgcta |
9359485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 565
Target Start/End: Original strand, 3963137 - 3963687
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||| ||||| || ||||||| ||| ||||||||||| | | |
|
|
| T |
3963137 |
cacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattgcggcaagctcgccaaagaaaattcttaactt |
3963236 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||| |||||||||||| || |||||||| |||||| | ||||||||||| |||| |||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
3963237 |
tcgggggcagttttaaactccagatacaattccaattacccagtacacggtgttgaacaattgccatatcatgattcagaatatctttataagcactttt |
3963336 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||| || || ||||||| ||||| |||||||||||| ||||| | |||||||| |||||||| ||| | |||||| | |
|
|
| T |
3963337 |
aactgaataattaccatccctttcaaaattccaaacaggcatatcatgagttactgaaggaagcaacggagtgttaaaaatgtttatggcagtactagag |
3963436 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| ||||| |||||||||| ||||||||||||||||||||| || || |||||||| ||||||||||| | |
|
|
| T |
3963437 |
tcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttg |
3963536 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | || ||||| |||||||| || ||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
3963537 |
aaggtaaaattcgtgcaacattactgatccagggatgatctcaaactggtatgtgttcacctgtacctatactccactgaaaaccacgccgaatcacatc |
3963636 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgct |
565 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3963637 |
tttagcactccaaatactacgccaaacataactaggattatggccaatgct |
3963687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 562
Target Start/End: Original strand, 24268564 - 24269108
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| || || ||||| | || |
|
|
| T |
24268564 |
cacaccgcacacctatcagtacaatgaactccttttgattgcaagcggattctcgtgggcaaacaattacgacaagctctccacaggaagttcttaacct |
24268663 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
| |||| |||||||| ||||||| |||||||| ||||| ||||||||||||| |||| || ||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
24268664 |
ttggggataattttaagctccaaacacaattccaattacctaacacacggtgttgtgaaacttccacatcatgatttagaatatccttataaacactttt |
24268763 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
|| |||| ||||||||| |||||||||| ||| ||||||||||||||| || ||||||| ||||| || || |||||||||||||||||| |||| |
|
|
| T |
24268764 |
aaatgaataagcaccatccttctcgaactttcaagcaggcacatcatgagtcaccgaagggagcaacggggtgttgaaaatatttctagcagtagcattg |
24268863 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| |||||| | ||||| |||||||||||||||| | |||||||||||||||||||| ||||||| ||| ||||| || ||||||| ||| |
|
|
| T |
24268864 |
tcaaaaaaaacattaactggctccatattccattgtttttgagatgtaaccaacaagtcagaaatagtgatatgtggccactctaa---atgatgactag |
24268960 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
|| ||| |||| ||||| ||||| ||||| |||| |||| ||||| ||| |||||||| ||||| ||||||||||| |||||| ||||||||||| || |
|
|
| T |
24268961 |
acggtacaatttgtgcaacattactgagccatggatgattccaaattggtatatgttcacatgttcctatactccactgaaaattgcgacgaatcacatc |
24269060 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctat |
562 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
24269061 |
ttttgcactccaaatactacgccaaacataactaggattatggcctat |
24269108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 30465964 - 30465545
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| | ||||| |||||||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
30465964 |
cacattgcacacctatcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaactt |
30465865 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
30465864 |
tcgggggcaattttaaactccagatacaattccagttacctggcacacggtgttgaacaactaccaaatcatgattcagaatatccttataagcactttt |
30465765 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| ||| ||||||||||| || |||||||||| |||||||||| ||||||| ||||| | |||||||| |||||||| |||||||||||| || | |
|
|
| T |
30465764 |
aactaaataagcaccatccctttcaaacttccaaacaggcacatcaagagttaccgaaggaagcaacggagtgttaaaaatgtttctagcagtaacagtg |
30465665 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattcca---ttgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgag |
411 |
Q |
| |
|
|| | |||||| |||||| ||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| |||||||| ||||||| || |
|
|
| T |
30465664 |
tcaaaaaaagtattaatgagctccatattccactgttgtttctggggtgtaatcaacaagtcagaaacggtgatgaatggccactccaagtgatgataag |
30465565 |
T |
|
| Q |
412 |
tagacagtaaaattcgtgca |
431 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
30465564 |
ttgaaggtaaaattcgtgca |
30465545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 42851261 - 42851177
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccata |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42851261 |
cacactgcacacctatcagtacactgaactccttttgattgcaatctaattcttgtgggcaaacaattacgacaagctctccata |
42851177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 25612206 - 25612321
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||| |||||||| ||||||||||| || |||||||| | | |
|
|
| T |
25612206 |
cacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctctccaaaggaaattcttaactt |
25612305 |
T |
|
| Q |
117 |
tcgggggcaattttaa |
132 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25612306 |
tcgggggcaattttaa |
25612321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 33336826 - 33336992
Alignment:
| Q |
37 |
acactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttcgggggcaattttaaactc |
136 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| || ||||||||||| | ||||||||||| | |||||||| | ||| | ||||||||||||||| |
|
|
| T |
33336826 |
acactgaacgccttttgattgcaatcggattctcgtaggcaaacaattgtggcaagctctccacaagaaattctttacctttagtggcaattttaaactc |
33336925 |
T |
|
| Q |
137 |
caaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatcct |
203 |
Q |
| |
|
|||| ||||| | ||||| || ||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33336926 |
caaacacaattttaattacctggaacacgatgttgtaaaactgccacatcatgattcagaatatcct |
33336992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 480 - 555
Target Start/End: Original strand, 33337250 - 33337325
Alignment:
| Q |
480 |
cctatactccattgaaaaccacgacgaatcacgtctttgacactccatatgctacgccaaacataactaggattat |
555 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||| |||||||| || ||||||||| |||| ||| |||||| |
|
|
| T |
33337250 |
cctatactccattgaaaaccaaggtgaatcacatctttcacactccaaatactacgccaaccatagctatgattat |
33337325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 462
Target Start/End: Complemental strand, 35826594 - 35826456
Alignment:
| Q |
325 |
cattaattagctccctattccattgtttttggggtgtaaccaacaagtcag-aaacagtgatagatggacactccaaatgatgatgagtagacagtaaaa |
423 |
Q |
| |
|
||||||||||| || |||||||||| || || ||||||||||||||||| | ||| ||||||| | ||||||||||| |||| ||||| | | |||| |
|
|
| T |
35826594 |
cattaattagccccttattccattgcttatgaggtgtaaccaacaagtctgaaaatagtgatatgcagccactccaaatgttgattagtagtcggaaaaa |
35826495 |
T |
|
| Q |
424 |
ttcgtgcagcattattgagctatgggtgatcccaaactg |
462 |
Q |
| |
|
| ||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
35826494 |
tgtgtgcaacattacaaagctaaggatgatcccaaactg |
35826456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 215761 - 215208
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
215761 |
cacactgcacacctatcaatacactgaactccttttgattgcaatcggattcttgtgggcaaacaattacgacaagctctccataggaaattcttgaact |
215662 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||| ||| |||||||| |||||||| ||| || ||||||| | |||||||||||||| |||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
215661 |
tcgagggaaattttaatctccaaatacaactcgagttacctgacacacggtgttgtaaaacttccatatcatgattcataatatccttgtaagcactttt |
215562 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| ||| ||||||||| |||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
215561 |
aactgaacaggcaccatccttctcgaactttcaaagaggaacatcatgagttaccgaagggaataacggagtaataaaaatatttctagcagtagaattg |
215462 |
T |
|
| Q |
315 |
tcnnnnnnng--cattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagt |
412 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
215461 |
taaaaaaaaaaacattaattagctccatattccattgttttcggggtgtaaccaacaagtcagaaaccgtgatagatggtcattccaaatgatgatgagt |
215362 |
T |
|
| Q |
413 |
agacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacg |
512 |
Q |
| |
|
| |||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
215361 |
aaacagtaaaattcgtgcagtattactgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccactgaaaaccacgacgaatcacg |
215262 |
T |
|
| Q |
513 |
tctttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
215261 |
tctttggcactccatatgctacgccaaacataactaggattatgacctatgcta |
215208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 566
Target Start/End: Original strand, 26006910 - 26007464
Alignment:
| Q |
22 |
tgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttcggg |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| | |
|
|
| T |
26006910 |
tgcacacctatcagtacactaaactccttttgattgcaatcagattcttgtgggcaaacaatttcgacaagctctccatatgaaattcttgatcgtcgag |
26007009 |
T |
|
| Q |
122 |
ggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcacttttaacgg |
221 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||| | |
|
|
| T |
26007010 |
ggaaattttaaactccaaatacaatttcagttagccggcacacagtgttgtacaactgccacatcatgattcagagtatccttgtaaacacttttaactg |
26007109 |
T |
|
| Q |
222 |
aat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatt------ |
313 |
Q |
| |
|
||| ||||||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
26007110 |
aataggcaccatccttctcgaatttccaaacaggcacatcatgagttaccgaaggaaataacggggtattataaatatttctagcagtagtattgtaaaa |
26007209 |
T |
|
| Q |
314 |
--atcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgag |
411 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
26007210 |
aaaaaaaaaaaagcattaattagctccatattccattgtttttggggtgtaaccaacaagttagaaacaatgatagatggccactccaaatgatgatgag |
26007309 |
T |
|
| Q |
412 |
tagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcac |
511 |
Q |
| |
|
||||| ||||||||| |||||||||| | ||| |||||||||||||||||||||| ||||||| |||| |||||||||| ||||||| ||| |||||||| |
|
|
| T |
26007310 |
tagacggtaaaattcatgcagcattactaagccatgggtgatcccaaactggaatgtgttctcctgtgtctatactccaatgaaaactacggcgaatcac |
26007409 |
T |
|
| Q |
512 |
gtctttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26007410 |
gtctttggcactccatatgctacgccaaacataactaggattatggcctatgcta |
26007464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 566
Target Start/End: Complemental strand, 54551901 - 54551353
Alignment:
| Q |
19 |
cactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttc |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
54551901 |
cactgcacacttatcagtacactgaactccttttgattgcaatcggattcttgtgggcaaacaattacgacaagctctccataggaaaatcttgactttc |
54551802 |
T |
|
| Q |
119 |
gggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcacttttaa |
218 |
Q |
| |
|
| ||| ||||||||||||||||| || |||||||| ||||||||||||| |||||||||||| |||||||| ||||||| | ||||||||||||||| |
|
|
| T |
54551801 |
gagggaaattttaaactccaaatacatgtccagttatccggcacacggtgatgtacaactgccacgtcatgatttagaatattcgtgtaagcacttttaa |
54551702 |
T |
|
| Q |
219 |
cggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcattatc |
316 |
Q |
| |
|
| |||| |||||||||||||||||||| |||| ||||||||||||| |||| ||| ||||||| ||| |||||||||||||||| ||||| |||| || |
|
|
| T |
54551701 |
ctgaataagcaccatccctctcgaactttcaaacaggcacatcatga-ttaccgaaaggaataatggaatattaaaaatatttctgacagtagcattgtc |
54551603 |
T |
|
| Q |
317 |
nnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtagac |
416 |
Q |
| |
|
||||||||||| ||| |||||||||| || |||| |||||||| |||||||||||||||||||||||| |||| |||||| |||||||| || |
|
|
| T |
54551602 |
aaaaaaagcattaattagatccatattccattgcttatgggatgtaaccagcaagtcagaaacagtgatagatggccacttcaaatgttgatgagtgaac |
54551503 |
T |
|
| Q |
417 |
agtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtctt |
516 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||| | | || ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
54551502 |
ggtaaaattcgtgcagcattattgagccatgggtgatctcaaactggaatgttctatcctgtgcctatactccactgaaaaccacgacgaagcacgtctt |
54551403 |
T |
|
| Q |
517 |
tgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54551402 |
tggcactccatatgctacgccaaacataactaggattatgacctatgcta |
54551353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 43 - 566
Target Start/End: Complemental strand, 48445928 - 48445412
Alignment:
| Q |
43 |
aactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttcgggggcaattttaaactccaaatt |
142 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
48445928 |
aactacttttgattgcaatcggagtcttgtgggcaaacaattacgacaagctctccatacgaaattcttgacctttgggggcaattttaaaatccaaata |
48445829 |
T |
|
| Q |
143 |
caattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcacttttaacggaat--gcaccatccctctcga |
240 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
48445828 |
caattccagttactcggcacacggtgttgtacaactgccacatcatgattcagaatatccttgtaagcacttttaactgaataagcatcatccctctcga |
48445729 |
T |
|
| Q |
241 |
acttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcat--tatcnnnnnnngcattaattagctcc |
338 |
Q |
| |
|
||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| || || || |||||||||||||| |
|
|
| T |
48445728 |
acttccaaacatgcacatcatgagttaccgaatggaataacggagtattaaaaatatttctagctatagtattgtaaaaaaaaaaacattaattagctcc |
48445629 |
T |
|
| Q |
339 |
ctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtagacagtaaaattcgtgcagcattat |
438 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
48445628 |
atattcccttgtttttggggtgtaaccaacaagtcagaaaccgtgatagatggtcatttcaaatgatgatgagaagacggtaaaattcgtgcagc-ttac |
48445530 |
T |
|
| Q |
439 |
tgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtctttgacactccatatgctacgcca |
538 |
Q |
| |
|
||||| ||| |||||||||| ||||| ||||||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
48445529 |
tgagccatgaatgatcccaaattggaaattgttctcctgtgcctatgctccactgaaaac----------cacgtctttggcactccatatgctacgcca |
48445440 |
T |
|
| Q |
539 |
aacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
48445439 |
aacataactaggattatgacctatgcta |
48445412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 22360073 - 22360467
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| |||||||||| || |
|
|
| T |
22360073 |
cacactgcacacctatcagtactctgaactccttttgattgcaatcatattcttatgggttaacaattatgacaagctctccataagaaattcttgacct |
22360172 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||| |||||||||||||||||| |||| |
|
|
| T |
22360173 |
tcgggggcaattttaaactccaaatataattccagttacccgacacac-gtgttgtacaacttccacctcatgatttagaatatccttgtaagcattttt |
22360271 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
22360272 |
aactgaataagcaccatccctctcgaacttccaaacaggcacatcttgagttatcgaagagaataacaaagtattaaaaatatttctagcagtagtattg |
22360371 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatga |
410 |
Q |
| |
|
|| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22360372 |
tccaaaaaagcattaatttactccatattccgttgtttttggggtgtaaccaacaagtcagaaacagtgatagatgaccactccaaatgatgatga |
22360467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 26430035 - 26430587
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||| |||| || ||||||| ||| || |||||||| | | |
|
|
| T |
26430035 |
cacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaatcgcggcaagctcgccaaaggaaattcttaactt |
26430134 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
26430135 |
tcgggggcaattttaagctccagatacaattccagttacccggtacacggtgttgaacaattgccatatcatgattcagaatatctttataagcactttt |
26430234 |
T |
|
| Q |
217 |
aacggaatgc--accatccctctcgaacttc-caaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatt |
313 |
Q |
| |
|
||| |||| ||||||||| || || || |||| ||||| |||||||||||| ||||| | |||||||| |||||||| ||||| |||||| | |
|
|
| T |
26430235 |
aactgaataattaccatccctttcaaaattttcaaacaggcatatcatgagttactgaaggaagcaacggagtgttaaaaatgtttctggcagtactaga |
26430334 |
T |
|
| Q |
314 |
atcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagta |
413 |
Q |
| |
|
||| | |||||| |||||| ||||||| ||||| |||||||||| ||||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
26430335 |
atcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagtt |
26430434 |
T |
|
| Q |
414 |
gacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgt |
513 |
Q |
| |
|
|| |||||||||||||| ||||| ||| | | || |||||||||||||| || ||||| | ||| ||||||||||| |||||||||| |||||||| | |
|
|
| T |
26430435 |
gaaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccactccgaatcacat |
26430534 |
T |
|
| Q |
514 |
ctttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26430535 |
ctttagcactccaaatactacgccaaacataactaggattatggccaatgcta |
26430587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 555
Target Start/End: Complemental strand, 24422931 - 24422900
Alignment:
| Q |
524 |
ccatatgctacgccaaacataactaggattat |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24422931 |
ccatatgctacgccaaacataactaggattat |
24422900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 22 - 555
Target Start/End: Original strand, 27453323 - 27453864
Alignment:
| Q |
22 |
tgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatcttcggg |
121 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
27453323 |
tgcacacatatcagtacaatgaactccttttgattgcaatcgaattcttgtgggcaaacaattacgacaagctctccataagaaattcttgacctttggg |
27453422 |
T |
|
| Q |
122 |
ggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcacttttaacgg |
221 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
27453423 |
ggcaattttaaactccaaatacaattttagttacccggcacacagtgttctacaactgccacatcatgattcagaatattcttgtaagcacttttaactg |
27453522 |
T |
|
| Q |
222 |
a--atgcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatt------ |
313 |
Q |
| |
|
| ||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
27453523 |
aatatgcaccatccctctcgaacttccaaacaagaacatcatgagttaccgaagggaataacagagtattaaaaatatttctagcaatagtattgtaaaa |
27453622 |
T |
|
| Q |
314 |
atcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagta |
413 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||| |||| ||| ||||||||||||| ||| |
|
|
| T |
27453623 |
aaaaaaagaagcattaattagctccatattccattgtttctggggtgtaaacaacaagtcagaaacaatgatatatggccacaccaaatgatgatgggta |
27453722 |
T |
|
| Q |
414 |
gacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgt |
513 |
Q |
| |
|
||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
27453723 |
gacggtaaaattcgtgcaacattactgagccatgggtgatcccaaactggaatgtgttcttttgtgcctatactccactgaaaagcacgacgaatcacgt |
27453822 |
T |
|
| Q |
514 |
ctttgacactccatatgctacgccaaacataactaggattat |
555 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27453823 |
ctttggcactccatatgctacgccaaacataactaggattat |
27453864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 565
Target Start/End: Original strand, 9610345 - 9610895
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||| ||||| || ||||||| ||| ||||||||||| | | |
|
|
| T |
9610345 |
cacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattgcggcaagctcaccaaagaaaattcttaactt |
9610444 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||| |||||| ||||| || |||||||| |||||||| ||||||||||| |||| |||| |||||||||||| ||||| || ||||||||||| |
|
|
| T |
9610445 |
tcgggggcagttttaagctccagatacaattccaattacccggtacacggtgttgaacaattgccatatcatgattcagcatatctttataagcactttt |
9610544 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||| || || ||||||| ||||| |||||||||||| ||||| | ||||||||| |||||||| ||||| |||||| | |
|
|
| T |
9610545 |
aactgaataattaccatccctttcaaatttccaaacaggcatatcatgagttactgaaggaagtaacggagtgttaaaaatgtttctggcagtactagag |
9610644 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| ||||| |||||||||| ||||||||||||||||||||| || || |||||||| ||||||||||| | |
|
|
| T |
9610645 |
tcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttg |
9610744 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | || |||||||||||||| || ||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
9610745 |
aaggtaaaattcgtgcaacattactgatccaaggatgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatc |
9610844 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgct |
565 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9610845 |
tttagcactccaaatactacgccaaacataactaggattatggccaatgct |
9610895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 29242950 - 29243347
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| |||||||| | ||||| |||||||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
29242950 |
cacactgcacacctgtcagtacactaaactcctttagattgcaagcgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaactt |
29243049 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||| |||||| ||||| || || |||||||||||||| ||||||||||| |||| |||| |||||||||||||||||| || || |||||||| |
|
|
| T |
29243050 |
tcgggggcatttttaagctccagatacagttccagttacccggtacacggtgttgaacaattgccacatcatgattcagaatatctttataggcactttt |
29243149 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||| || || ||||||| |||||||||||||||||| ||||| | ||| |||| ||||||||||||||||||||| || |
|
|
| T |
29243150 |
aactgaataattaccatccctttcaaatttccaaacaggcacatcatgagttaccgaaggaagcaacagagtgttaaaaatatttctagcagtaacaaag |
29243249 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagt |
412 |
Q |
| |
|
|| | |||||| |||||| ||||||| |||||||||||||||| |||||||| |||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
29243250 |
tcaaaaaaagtattaataagctccatattccactgtttttggggtgtaatcaacaagttagaaacagtgatggatggccattccaattgatgatgagt |
29243347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 30797641 - 30798054
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||| |||||||| | ||||| ||||||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
30797641 |
cacactgcacacctgtcagtgcattgaactcctttagattgcaaacgaattctcatgggcaagcaattacggcaagctcgccaaaggaaattcttaactt |
30797740 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
30797741 |
tcgggggcaattttaagctccagatacaattccagttacccggtacacggtgttgaacacttgccatatcatgattcagaatatctttataagcactttt |
30797840 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| ||||||||| || || ||||||| ||||| |||||||||||| ||||| | |||||||| |||||||||||||| |||||| | |
|
|
| T |
30797841 |
aactgaataattaccatccctttcaaatttccaaacaggcatatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctggcagtactagag |
30797940 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| ||||| |||||||||| ||||||||||||||||||||| || || |||||| | ||||||||||| | |
|
|
| T |
30797941 |
tcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacagtgatggaaggccactccgattgatgatgagttg |
30798040 |
T |
|
| Q |
415 |
acagtaaaattcgt |
428 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
30798041 |
aaggtaaaattcgt |
30798054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 562
Target Start/End: Original strand, 3042 - 3589
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||| ||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
3042 |
cacactgcacacctatcagtacactgaactcctttagattgcaaacggattctcgtggacaagcaattacggcaagctcgccaaaggaaattctttactt |
3141 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
3142 |
acgggggcaattttaaactctagatacaattccagttacccggcacacggtgttgaacaactgccacatcatgattcagaatatccttataagcactttt |
3241 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
|| |||| | ||||| |||||||||||| |||| |||||||||||||||||| ||||| | |||| ||| |||||||||| |||||||||| ||||| |
|
|
| T |
3242 |
gactgaataagtaccattcctctcgaactttcaaacaggcacatcatgagttaccgaaggaagcaacgtagtgttaaaaatatatctagcagtaacatta |
3341 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | ||| || |||||| ||||||| ||||| |||||||||| |||||| ||||||| |||| ||||| | |||||||| ||||||||||| | |
|
|
| T |
3342 |
tcaaaaaaagtattgatgagctccatattccactgtttctggggtgtaagcaacaaatcagaaatagtggtagatagccactccaagtgatgatgagttg |
3441 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | ||||||||||||||||| || ||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
3442 |
atggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatc |
3541 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctat |
562 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
3542 |
tttagcactccaaatactacgccaaacataactaggattatggcctat |
3589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 260 - 566
Target Start/End: Complemental strand, 55523 - 55217
Alignment:
| Q |
260 |
atgagttacagaagggaataacggagtattaaaaatatttctagcagtatcattatcnnnnnnngcattaattagctccctattccattgtttttggggt |
359 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
55523 |
atgagttaccgaagggaataacagagtattaaaaatatttctagcagtatcattatcaaaaaaagcattaattagctccatattccattgtttttgcggt |
55424 |
T |
|
| Q |
360 |
gtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |||||||||| |
|
|
| T |
55423 |
gtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatgagtagacagttaaattcgtgcatcattattgggccatggctgatcccaaa |
55324 |
T |
|
| Q |
460 |
ctggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtctttgacactccatatgctacgccaaacataactaggattatggcc |
559 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55323 |
ctggaatatgttctcttgtgcctatactccactgaaaaccacgacgaatcacatctttggcactccatatgcaacgccaaacataactaggattatggcc |
55224 |
T |
|
| Q |
560 |
tatgcta |
566 |
Q |
| |
|
||||||| |
|
|
| T |
55223 |
tatgcta |
55217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 57695 - 57546
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57695 |
cacactgcacacctatcagtacactgaactccttttgattataatcggattcttgtgggaaaacaattacgacaagctctccatagaaaattcttgatct |
57596 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacgg |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
57595 |
tcgggggcaattttaaactccaaatacaatttcagttaccccgcacacgg |
57546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 55580 - 55523
Alignment:
| Q |
160 |
cacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttta |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
55580 |
cacacggtgttgtacaactgccacatcatgattcagaatatccttgtaagcgctttta |
55523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 7436377 - 7436668
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7436377 |
cacactgcacacctatcagtacactgaacttcttttgattgcaatcggattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgacct |
7436476 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7436477 |
ttgggggcaattttaaactctaaatacaattccagttacccggcacacggtgttgtacaactgccacatcatgattcagaatatccttgtaagcactttt |
7436576 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcag |
306 |
Q |
| |
|
||| |||| ||||| ||||||||||| ||||||| | |||||||||||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
7436577 |
aactgaataggcaccttccctctcgaatttccaaacatgcacatcatgagttaccgaagggaataatggggtattaaaaatatttctagcag |
7436668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 32956734 - 32956183
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| |||||||| | ||||| |||||||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
32956734 |
cacactacacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaactt |
32956635 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|| |||| |||||||| ||||| || ||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
32956634 |
tcaggggaaattttaagctccagatacaattccagttacccggtacacggtgttgaacaattgccatatcatgattcagaatatctttataagcactttt |
32956535 |
T |
|
| Q |
217 |
aacggaatgca--ccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| |||||||| || || ||||||| ||| | |||||||||||| ||||| | |||||||| |||||||||||||| |||||| || |
|
|
| T |
32956534 |
aactgaataattcccatccctttcaaatttccaaacaggtatatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctggcagtaccagag |
32956435 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| ||||| |||||||||| |||||||||||||||| |||| || || |||||||| ||||||||||| | |
|
|
| T |
32956434 |
tcaaaaaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacaatgatggaaggccactccaattgatgatgagttg |
32956335 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | ||||||||||||||||| |||||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
32956334 |
aaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatatgttcgcctgtacctatactccactgaaaaccacgtcgaatcacatc |
32956235 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32956234 |
tttagcactccaaatactacgccaaacataactaggattatggccaatgcta |
32956183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 328 - 566
Target Start/End: Original strand, 7437443 - 7437681
Alignment:
| Q |
328 |
taattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtagacagtaaaattcg |
427 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
7437443 |
taattagctccatattccattgtttttggtgtgtaaccaacaaatcagaaacaataatagatggccactccaaatgatgatgagtagacggcaaaattcg |
7437542 |
T |
|
| Q |
428 |
tgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtctttgacactccat |
527 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
7437543 |
tgttgcattaccgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccactcaaaaccacggcgaatcacgtctttggcactccat |
7437642 |
T |
|
| Q |
528 |
atgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7437643 |
atgctacgccaaacataactaggattaaggcctatgcta |
7437681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 384 - 566
Target Start/End: Complemental strand, 7607120 - 7606938
Alignment:
| Q |
384 |
atagatggacactccaaatgatgatgagtagacagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgccta |
483 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||| |||||||||||| |||||| | || |||||||||| ||||||||||| ||||||| | |||||| |
|
|
| T |
7607120 |
atagatggccactccaaatgataacgagtagacggtaaaattcgtgttgcattactaggccatgggtgatctcaaactggaatgtgttctcctatgccta |
7607021 |
T |
|
| Q |
484 |
tactccattgaaaaccacgacgaatcacgtctttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607020 |
tactccactgaaaactacatcgaatcacgtctttggcactcaatatgctacgccaaacataactaggattatggcctatgcta |
7606938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 7607209 - 7607142
Alignment:
| Q |
324 |
gcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatgg |
391 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||||||| |||| |||||| |||||||| |
|
|
| T |
7607209 |
gcattaattagctctgtattccattgtttttggtgtataaccaacaaatcagcaacagtaatagatgg |
7607142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 46091399 - 46091936
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||| |||| ||| || |||||||| | | |
|
|
| T |
46091399 |
cacattgcacacctatcagtacactaaactcctttagattgcaaacagattctcgtgggcaa-------------gctcgccaaaggaaattcttaactt |
46091485 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||| |||||||| ||||||||| || ||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
46091486 |
tcgagggcaattataaactccagatacaattccagttacccggcacatggtgttgaacaattgccacatcatgattcagaatatccttatatgcactttt |
46091585 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| | ||||||||| || |||||||||| |||||||||||||||||| |||| | |||| ||| |||||||| |||||||||||| || | |
|
|
| T |
46091586 |
aactgaataagtaccatccctttcaaacttccaaacaggcacatcatgagttaccaaaggaagcaacg-agtgttaaaaatgtttctagcagtaacagtg |
46091684 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| ||||| | |||||||| |||||||||||||| |||||| ||||| ||||| || ||||||||||| | |
|
|
| T |
46091685 |
tcaaaaaaagtattaatgagctccatattccactgtttctcgggtgtaatcaacaagtcagaaatagtgatggatggccactctaagtgatgatgagttg |
46091784 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | ||||||||||||||||| || ||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
46091785 |
aaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatc |
46091884 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46091885 |
tttagcactccaaatactacgccaaacataactaggattatggcctatgcta |
46091936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 4965 - 4416
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| |||||||| |||||||| ||||| || ||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
4965 |
cacactgcatacctatcagtacactaaactcctttagattgcaaacagattctcgtgggaaagcaattacagcaagctcgccaaaggaaattcttcactt |
4866 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||| |||| |||||||||| || |||||||| |||| | |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4865 |
tcggg--caatcttaaactccagatacaattccatttacgcagcacacggtgttgtacaattgccacatcatgattcagaatatccttataagcactttt |
4768 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
||| |||| | ||| ||| | || |||||| ||| ||||| |||||||||| | ||||| | ||| ||| |||||||||||||||||||| || | |
|
|
| T |
4767 |
aactgaataagtaccgtccgtttcaaacttcgaaacaggcatatcatgagttgccgaaggaaggaacaaagtgttaaaaatatttctagcagtgacagtc |
4668 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| | ||| |||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
4667 |
tcaaagaaagtattaatgagctccatattccactatttatggggtgtaatcaacaagtcagaaacagtgatggatggccactccaagtgatgatgagttg |
4568 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| ||||||||| |||| ||||| ||| | | ||||||||||||||||| || ||||| | | | ||||||||||| | |||| |||| | |||||| || |
|
|
| T |
4567 |
atggtaaaattcatgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctatacctatactccactaaaaatcacgccaaatcacatc |
4468 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||| | ||||| || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4467 |
tttagccctccaaatactacgccaaacataactaggattatgacctatgcta |
4416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 27780 - 28078
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| | |||||||||| || |
|
|
| T |
27780 |
cacactgcacacctatcagtacactaaactcctcttgattgcaatcggattcttatgggcaaacaattacgacaaactctccaaatgaaattcttgacct |
27879 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27880 |
tcgggggcaattttaaactccaaatacaatttcaattacccgacacacggtgttgtacaacggccacatcatgattcagaatatccttgtaagcactttt |
27979 |
T |
|
| Q |
217 |
aacggaat--gcaccatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatt |
313 |
Q |
| |
|
||| |||| || ||| |||||||||||| ||| ||||||||||||||| || |||| |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
27980 |
aactgaatagacattatctctctcgaacttcgaaacaggcacatcatgagtaaccgaagataataacggagtattaaaaatatttttagcagtaacatt |
28078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 17 - 566
Target Start/End: Complemental strand, 186421 - 185885
Alignment:
| Q |
17 |
cacactgcacacctatcagtacactgaactccttttgattgcaatcagattcttgtgggcaaacaattacgacaagctctccatagaaaattcttgatct |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||| |||||||| ||||||| ||| || |||||||| | | |
|
|
| T |
186421 |
cacactgcacacctgtcagtacactgaactcctttagattgcaaacgaattctcgtgggcaagcaattacggcaagctcgccaaaggaaattcttaactt |
186322 |
T |
|
| Q |
117 |
tcgggggcaattttaaactccaaattcaattccagttacccggcacacggtgttgtacaactgccggatcatgattcagaatatccttgtaagcactttt |
216 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||| |||||||| | |||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
186321 |
tcgggggcaattttaagctccagatacagttccaattacccggtat---------------tgccatatcatgattcagaatatctttataagcactttt |
186237 |
T |
|
| Q |
217 |
aacggaatgc--accatccctctcgaacttccaaataggcacatcatgagttacagaagggaataacggagtattaaaaatatttctagcagtatcatta |
314 |
Q |
| |
|
|| | || ||||||||| | || ||||||| ||||| |||||||||||| |||| | |||| ||| |||||||||||| | |||||| | |
|
|
| T |
186236 |
aattgtataattaccatccctttaaaatttccaaacaggcatatcatgagttaccaaaggaagcaacgaagtgttaaaaatatttatggcagtactagag |
186137 |
T |
|
| Q |
315 |
tcnnnnnnngcattaattagctccctattccattgtttttggggtgtaaccaacaagtcagaaacagtgatagatggacactccaaatgatgatgagtag |
414 |
Q |
| |
|
|| | |||||| |||||| ||||||| ||||| |||||||||| |||||||||||||||| ||||||| || |||||||| ||||||||||| | |
|
|
| T |
186136 |
tcaaagaaagtattaatgagctccatattccactgtttctggggtgtaatcaacaagtcagaaacaatgatagaaggccactccaattgatgatgagttg |
186037 |
T |
|
| Q |
415 |
acagtaaaattcgtgcagcattattgagctatgggtgatcccaaactggaatatgttctcatgtgcctatactccattgaaaaccacgacgaatcacgtc |
514 |
Q |
| |
|
| |||||||||||||| ||||| ||| | | || |||||||||||||| || ||||| | ||| ||||||||||| ||||||||||| |||||||| || |
|
|
| T |
186036 |
aaggtaaaattcgtgcaacattactgatccaaggttgatcccaaactggtatttgttcgcctgtacctatactccactgaaaaccacgtcgaatcacatc |
185937 |
T |
|
| Q |
515 |
tttgacactccatatgctacgccaaacataactaggattatggcctatgcta |
566 |
Q |
| |
|
||| ||||||| || ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
185936 |
tttagcactccaaatactacgccaaacataagtaggattatggccaatgcta |
185885 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 562
Target Start/End: Complemental strand, 18393 - 18317
Alignment:
| Q |
486 |
ctccattgaaaaccacgacgaatcacgtctttgacactccatatgctacgccaaacataactaggattatggcctat |
562 |
Q |
| |
|
||||||||||||||| | ||||| |||||||| |||||| |||| ||| |||||||||| ||||||||||| ||||| |
|
|
| T |
18393 |
ctccattgaaaaccaaggcgaattacgtctttcacactctatattctatgccaaacatagctaggattatgtcctat |
18317 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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