View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_low_10 (Length: 372)
Name: NF4046_low_10
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 6157191 - 6157546
Alignment:
| Q |
1 |
tgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6157191 |
tgtattcataaaccaaaagcttttgatctatacttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctc |
6157290 |
T |
|
| Q |
101 |
ggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtgacgtttg |
200 |
Q |
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| T |
6157291 |
ggtcagaaattcctgacaaccttgaccaccattaggatttaaccgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtgacgtttg |
6157390 |
T |
|
| Q |
201 |
taacttaaataatgaccaaaagtataatttagccgaaaaagaattcatttattcataataatattgtaacgaacaaagtcctaaaagttacctcgccggt |
300 |
Q |
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| T |
6157391 |
taattta---aatgaccaaaagtataatttagccgaaaaaaaattcatttattcataataatattgtaacgaacaaagtcctaaaagttacctcgccaga |
6157487 |
T |
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| Q |
301 |
ttggagacgacccttgtaaactcttccaaaaccaccttcgccaatcaattcattaaaac |
359 |
Q |
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| T |
6157488 |
ttggagacgacccttgtaaactcttccaaaaccaccttcgccaatcaattcattaaaac |
6157546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 215 - 358
Target Start/End: Complemental strand, 17966349 - 17966208
Alignment:
| Q |
215 |
accaaaagtataatttagccgaaaaagaattcatttattcataataatattgtaacgaacaaagtcctaaaagttacctcgccggtttggagacgaccct |
314 |
Q |
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| T |
17966349 |
accaaaagtataatttagccaaaaaa-aattcatttaca-attataatatataaatgaacaacgtcctaaaagttaccacaccggttgggagacaaccct |
17966252 |
T |
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| Q |
315 |
tgtaaactcttccaaaaccaccttcgccaatcaattcattaaaa |
358 |
Q |
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| T |
17966251 |
tgtaaactcttccaaaaccaccttcccctatcaattccttaaaa |
17966208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 56020950 - 56021111
Alignment:
| Q |
1 |
tgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| | | |||||||| ||| | ||| ||| || ||| |
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| T |
56020950 |
tgtattcataaaccaaaagcatttgatctccattggtgcaataaccaattaacttaacaagatta---gcatgacgcagcacacttagaatatcaagctc |
56021046 |
T |
|
| Q |
101 |
ggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgca |
165 |
Q |
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| T |
56021047 |
tgtcataaattcgtgacagccttgacaaccatcaggatttaactgttttactgcaacaagctgca |
56021111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 56021186 - 56021267
Alignment:
| Q |
277 |
agtcctaaaagttacctcgccggtttggagacgacccttgtaaactcttccaaaaccaccttcgccaatcaattcattaaaa |
358 |
Q |
| |
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|||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| | || | |||||| |||||| |
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| T |
56021186 |
agtcttaaaagttacctcgccgtttgggagacgacccttgtaaacacttccaaaaccacctacccccagcaattccttaaaa |
56021267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 54033287 - 54033450
Alignment:
| Q |
1 |
tgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctc |
100 |
Q |
| |
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|||| ||||||||||||||| |||||||| || ||||| ||||||||||||||||| |||| | |||||| | | || || || |||||||||||| |
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| T |
54033287 |
tgtactcataaaccaaaagcctttgatctccatcagtgcagtagccaattaacttaaccagatta---gaatgatgtagcaagcttaacataagaacctc |
54033383 |
T |
|
| Q |
101 |
ggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgcaaa |
167 |
Q |
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|||| |||||||||| ||||||||| ||||| | || |||| |||||||| ||||||||||||||| |
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| T |
54033384 |
agtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaacaagctgcaaa |
54033450 |
T |
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