View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_low_11 (Length: 342)
Name: NF4046_low_11
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 19293360 - 19293162
Alignment:
| Q |
19 |
tatagtgcattagtaaattaatttttaccagtactactatattgttgagtgaatagttgataaaagagttgaggcaccacattccaaacaatagtttatg |
118 |
Q |
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| T |
19293360 |
tatagtgcattagtaaattaatttttaccagtactactatattgttgagtgaatagttgataaaagagttgaggcaccacatttcaaacaatagtttatg |
19293261 |
T |
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| Q |
119 |
gtactaaagagcaaggaaacaaaacaggcaaagactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctctgaaaaatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19293260 |
gtactaaagagcaaggaaacaaaacaggcaaagactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctcttaaaaatg |
19293162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 19293012 - 19292943
Alignment:
| Q |
220 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
289 |
Q |
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| T |
19293012 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
19292943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 54787326 - 54787128
Alignment:
| Q |
19 |
tatagtgcattagtaaattaatttttaccagtactactatattgttgagtgaatagttgataaaagagttgaggcaccacattccaaacaatagtttatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54787326 |
tatagtgcattagtaaattaatttttaccagtactactatattgttgagtgaatagttgataaaagagttgaggcaccacatttcaaacaatagtttatg |
54787227 |
T |
|
| Q |
119 |
gtactaaagagcaaggaaacaaaacaggcaaagactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctctgaaaaatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54787226 |
gtactaaagagcaaggaaacaaaacaggcaaagactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctcttaaaaatg |
54787128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 54786978 - 54786909
Alignment:
| Q |
220 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786978 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
54786909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 54786744 - 54786699
Alignment:
| Q |
291 |
gttcaaataagaatacttaccaaccatagtagtcatttcatctcac |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54786744 |
gttcaaataagaatacttaccaaccatagtagtcatttcatttcac |
54786699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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