View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4046_low_14 (Length: 322)

Name: NF4046_low_14
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4046_low_14
NF4046_low_14
[»] chr5 (1 HSPs)
chr5 (11-307)||(14321030-14321325)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 14321030 - 14321325
Alignment:
Q  11 catcatcacggaagcggagccacataccatcaactccctggaacaaatgtcagcaagctaaacagctctttcgaactccacaatccaagccaaacataga 110  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||    
T  14321030 catcaacacggaagcggacccacataccatcaactccctggaacaaatgtcaacaagctaaacggctctttctaac-ccacaatccaagccaaacataga 14321128  T
Q  111 gaacaacgagatatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtggca 210  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||    
T  14321129 gaacgacgagatatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtggca 14321228  T
Q  211 cctgaaacaaccgcgactaatataaaaaacaccaacccacaagcacggaggcggtagatcttaaaacaaattgccaccaaccatccataaactagat 307  Q
    ||| ||||||||||||| ||||| ||||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  14321229 ccttaaacaaccgcgacgaatatcaaaaacaccaacccaccggcacggaggtggtagatcttaaaacaaattgtcaccaaccatccagaaactagat 14321325  T

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