View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4046_low_15 (Length: 315)
Name: NF4046_low_15
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_15 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 9231207 - 9230896
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9231207 |
tagatacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
9231108 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9231107 |
tcttcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttg |
9231008 |
T |
|
| Q |
201 |
gaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
9231007 |
gaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttg |
9230908 |
T |
|
| Q |
301 |
cctttgcttctc |
312 |
Q |
| |
|
||||| ||||| |
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|
| T |
9230907 |
tctttgtttctc |
9230896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 18351381 - 18351692
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18351381 |
tagatacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
18351480 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18351481 |
tcttcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttg |
18351580 |
T |
|
| Q |
201 |
gaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
18351581 |
gaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttg |
18351680 |
T |
|
| Q |
301 |
cctttgcttctc |
312 |
Q |
| |
|
||||| ||||| |
|
|
| T |
18351681 |
tctttgtttctc |
18351692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 16902721 - 16902904
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16902721 |
tagatacttttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
16902820 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
16902821 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgtgtaagtgtcgacacaattttcttgtgcacgt |
16902904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2914807 - 2915116
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914807 |
tagatacttttttagacctattggcaatactacgtgggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
2914906 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2914907 |
tcttcggaaaaaattgtgtctttcaccacggaatcctataagtgagattttgagtaagtgtctacacaattttcttgtgcacgtgtgcgaagatattttg |
2915006 |
T |
|
| Q |
201 |
gaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatcttg |
300 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| |||||||| |
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|
| T |
2915007 |
gaaaatgagtcacca-tgataccaacccatctgagggagttcttcgttttaatccttatccttcttcttgttatcggatatctcgttcag-cacatcttt |
2915104 |
T |
|
| Q |
301 |
cctttgcttctc |
312 |
Q |
| |
|
||||| ||||| |
|
|
| T |
2915105 |
tctttgtttctc |
2915116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 40808195 - 40808404
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40808195 |
tagatactcttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
40808294 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40808295 |
tcttcgggaaaaattgtgtctttcaccacggaatcctacaagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttg |
40808394 |
T |
|
| Q |
201 |
gaaaatgagt |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
40808395 |
gaaaatgagt |
40808404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 7999646 - 7999348
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7999646 |
tagatacttttttagacctattgacgatactacgtaggagtcctaaatttcaacaatttgtgtccatttttcatgatattagagatggatccaagcgaat |
7999547 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
7999546 |
tcttcgggaaaaattgtgtctttcaccacagaatcctataagtgagattttgagtaagtgtttacataattttcttgagcatgtgtgcgaagatattttg |
7999447 |
T |
|
| Q |
201 |
gaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatctt |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| || ||||| ||||| |
|
|
| T |
7999446 |
aaaaatgagtcaccattgatatctacccatctgagggagttcttcgttttagtccttatccttcttcttgttaccggatatctcgtttagacaaatctt |
7999348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30242167 - 30242372
Alignment:
| Q |
1 |
tagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30242167 |
tagatacttttttagacctattggcgatactacgtaggagtcctaaattttaacaatttgtatc-atttttcatgatattagggatgaatccaagcgaat |
30242265 |
T |
|
| Q |
101 |
tcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttta |
200 |
Q |
| |
|
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30242266 |
tctttggaaaaaattgtgtctttcactacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaatatattttg |
30242365 |
T |
|
| Q |
201 |
gaaaatg |
207 |
Q |
| |
|
||||||| |
|
|
| T |
30242366 |
gaaaatg |
30242372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 10627118 - 10627065
Alignment:
| Q |
38 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10627118 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
10627065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 1818 - 1953
Alignment:
| Q |
50 |
tcaacaatttgtatccatttttcatgatattagggatggatccaa---------gcgaattcttcgggaaaaattgtgtctttcaccacggaatcctata |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||| | ||||||||||| | |||||||||||||| ||| | |||||| ||| |
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|
| T |
1818 |
tcaaaaatttgtatccatttttcatgatattatgcatggatcagatatatcatggcgaattcttcagaaaaaattgtgtcttccacaatggaatctgata |
1917 |
T |
|
| Q |
141 |
agtgagatttcgagtaagtgtcgacacaattttctt |
176 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
1918 |
agtgagatttcgagtaagtgtttacataattttctt |
1953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 2612139 - 2612073
Alignment:
| Q |
55 |
aatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctt |
122 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||||||| |
|
|
| T |
2612139 |
aatttgtttccatttttcatgatattaggg-tggatccgaacgaattcttcgaaaaatattgtgtctt |
2612073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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