View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_low_16 (Length: 314)
Name: NF4046_low_16
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 3429014 - 3429312
Alignment:
| Q |
1 |
taccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcattttcttgtgaa |
100 |
Q |
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| T |
3429014 |
taccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcattttcttgtgaa |
3429113 |
T |
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| Q |
101 |
gtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggtttctcattcccagcca |
200 |
Q |
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| T |
3429114 |
gtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggtttctcattcccagcca |
3429213 |
T |
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| Q |
201 |
taattacaaggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtccccatcttggttgt |
299 |
Q |
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| T |
3429214 |
taattacaaggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtccccatcttggttgt |
3429312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 3425544 - 3425833
Alignment:
| Q |
13 |
ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaacct---tcattttcttgtgaagtggaagta |
109 |
Q |
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| T |
3425544 |
ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta |
3425643 |
T |
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| Q |
110 |
gttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggtttctcattcccagccataattacaa |
209 |
Q |
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| T |
3425644 |
gctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgggttctcattaccagccataatgacaa |
3425743 |
T |
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| Q |
210 |
ggaccttctcttcgtaggacttgatgggttccttagtttgagggtcactctctttgttgtccaagtcattgtggtccccatcttggttgt |
299 |
Q |
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||| |||||||| || ||||| |||| |||||||||||||||||| |||||||||||||| || | || ||| |||||||||||| |
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| T |
3425744 |
ggatattctcttcataaaccttgacaggtttcttagtttgagggtcactttctttgttgtccaaagcactatgatcctcatcttggttgt |
3425833 |
T |
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