View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_low_2 (Length: 533)
Name: NF4046_low_2
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 3202413 - 3201909
Alignment:
| Q |
13 |
gattatacttttgtcagcctagcatggaatattttggaccatcaagtgggattgagtcctctaatttgatcaatgttgaatgtcaggactcttatctatc |
112 |
Q |
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| T |
3202413 |
gattatacttttgtcagcctagcatggaatattttggaccatcaagtgggattgagtcctctaatttgatcaatgttgaatgtcaggactcttatctatc |
3202314 |
T |
|
| Q |
113 |
atctgaggatggtgacgactatgatgatttaatgatgattggcgaagaagttagtaaaagcaaccaagggaagtcaattgaagccattcatcaggaagtg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202313 |
atctgaggatggtgacgactatgatgatttaatgatgattggcgaagaagttagtaaaagcaaccaagggaagtcaattgaagccattcatcaggaagtg |
3202214 |
T |
|
| Q |
213 |
tccgattatactttttcccagcctgccgtgaaaagttttggaccagtaagtgggattgattcttttaattgttactctttggtatcacataatttgaaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202213 |
tccgattatactttttcccagcctgccgtgaaaagttttggaccagtaagtgggattgattcttttaattgttactctttggtatcacataatttgaaat |
3202114 |
T |
|
| Q |
313 |
gtaaaatcttggtcattcttcatatgaacttctatatggatgtatatagggttttgttatcaccactgcatttttagtgcatttcttatacctcttgttt |
412 |
Q |
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| T |
3202113 |
gtaaaatcttggtcattcttcatatgaacttctatatggatgtatatagggttttgttatcaccactgcatttttagtgcatttcttatacctcttgttt |
3202014 |
T |
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| Q |
413 |
gaccactaagtgttaagtggtcttggtacccttgcnnnnnnnngagtattggaattatcgcttgtataattagctaaaaataaaacggaggaaagacgat |
512 |
Q |
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| T |
3202013 |
gaccactaagtgttaagtggtcttggaacccttgcaaaaaaaagagtattggaattatcgcttgtataattagctaaaaataaaacggaggaaagacgat |
3201914 |
T |
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| Q |
513 |
cttac |
517 |
Q |
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||||| |
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| T |
3201913 |
cttac |
3201909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 12024438 - 12024381
Alignment:
| Q |
242 |
gaaaagttttggaccagtaagtgggattgattcttttaattgttactctttggtatca |
299 |
Q |
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|||||| |||||||| |||||||| ||||| |||| ||| ||| |||||||||||||| |
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| T |
12024438 |
gaaaaggtttggaccggtaagtggaattgagtcttctaactgtaactctttggtatca |
12024381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 12024595 - 12024511
Alignment:
| Q |
121 |
atggtgacgactatgatgatttaatgatgattggcgaagaagttagtaaaagcaaccaagggaagtcaattgaagccattcatca |
205 |
Q |
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||||||| |||||||| |||||| |||| |||| ||| ||||||||||||| ||| | ||||| ||||||| |||||||||| |
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| T |
12024595 |
atggtgatgactatgaggatttagtgatagttggtgaaaaagttagtaaaagtaacaagaggaaggtaattgaaaccattcatca |
12024511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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